Os03g0721300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF946, plant family protein.
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Os03g0721300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF946, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 207.19 | 0.676 | 9.09 | -0.883 | 0.909 | -1.05 | 0.713 | 0.142 | 0.0515 | 21.4 | 64 | 1152 | -- | -- |
| 207.22 | 0.67 | 9.09 | -0.877 | 0.91 | -1.04 | 0.692 | -- | 0.0494 | 21.4 | 64 | 1152 | -- | -- |
| 208.83 | 0.673 | 9.09 | -0.892 | 0.911 | -1.05 | -- | -0.0929 | 0.0575 | 21.2 | 63.93 | 1146 | -- | -- |
| 208.84 | 0.673 | 9.09 | -0.903 | 0.906 | -1.06 | -- | -- | 0.0536 | 21.2 | 64 | 1149 | -- | -- |
| 243.63 | 0.727 | 9.09 | -0.916 | -- | -1.44 | -- | -0.241 | -0.0617 | -- | 67 | 940 | -- | -- |
| 243.95 | 0.732 | 9.15 | -0.678 | 1.06 | -- | 0.975 | -- | -0.196 | 22 | -- | -- | -- | -- |
| 247.52 | 0.737 | 9.15 | -0.714 | 1.06 | -- | -- | -- | -0.197 | 21.8 | -- | -- | -- | -- |
| 242.11 | 0.725 | 9.15 | -0.932 | -- | -1.41 | -- | -- | -0.315 | -- | 72 | 972 | -- | -- |
| 229.89 | 0.706 | 9.08 | -- | 0.931 | -0.939 | -- | -- | 0.125 | 21.2 | 64 | 1159 | -- | -- |
| 314.75 | 0.829 | 9.12 | -0.703 | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
| 260.97 | 0.756 | 9.13 | -- | 1.06 | -- | -- | -- | -0.117 | 21.8 | -- | -- | -- | -- |
| 264.76 | 0.758 | 9.12 | -- | -- | -1.32 | -- | -- | -0.195 | -- | 72.94 | 937 | -- | -- |
| 327.81 | 0.845 | 9.11 | -- | -- | -- | -- | -- | -0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 203.65 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 4 |
| 2 | 203.99 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 9 |
| 3 | 204.60 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 13 |
| 4 | 204.62 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 11 |
| 6 | 204.68 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 6 |
| 15 | 205.77 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 40 | 207.59 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 43 | 207.69 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 48 | 208.05 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 14 |
| 72 | 208.19 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 76 | 208.56 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 77 | 208.78 | humidity | 70 | 1440 | < th | dose dependent | sin | 14 | NA |
| 80 | 208.94 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 88 | 209.15 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 114 | 209.32 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 136 | 209.65 | radiation | 40 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 171 | 209.92 | radiation | 30 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 173 | 209.94 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 188 | 210.06 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 191 | 210.11 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 195 | 210.12 | humidity | 70 | 1440 | < th | dose dependent | rect. | 11 | 9 |
| 232 | 210.24 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 257 | 210.30 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 296 | 210.45 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 311 | 210.56 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 327 | 210.59 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 329 | 210.63 | radiation | 40 | 1440 | > th | dose dependent | sin | 17 | NA |
| 345 | 210.65 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 22 |
| 346 | 210.66 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 354 | 210.70 | radiation | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 388 | 210.84 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 489 | 211.38 | radiation | 30 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 496 | 211.42 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 501 | 211.46 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 8 |
| 518 | 211.49 | radiation | 30 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 544 | 211.53 | humidity | 70 | 1440 | < th | dose dependent | no | NA | NA |
| 625 | 211.64 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 628 | 211.64 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 651 | 211.66 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 654 | 211.67 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 699 | 211.77 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 759 | 211.81 | radiation | 40 | 1440 | > th | dose dependent | no | NA | NA |
| 901 | 211.82 | radiation | 20 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 948 | 211.90 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 951 | 211.92 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 11 |
| 974 | 211.93 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 7 |
| 996 | 211.98 | radiation | 40 | 1440 | > th | dose independent | rect. | 10 | 6 |