BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0718600 Os03g0718600|J065101G20
         (95 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK106450                                                          204   2e-53
Os03g0718600  Cytochrome c oxidase assembly protein CtaG/Cox...   196   4e-51

>AK106450 
          Length = 284

 Score =  204 bits (518), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 94/95 (98%), Positives = 95/95 (100%)

Query: 1   VKVKPGESALAFYTAENRSSAPITGVSTYNVAPMKAAIYFNKIQCFCFEEQTLLPGEQID 60
           VKVKPGESALAFYTAENRSSAPITGVST+NVAPMKAAIYFNKIQCFCFEEQTLLPGEQID
Sbjct: 190 VKVKPGESALAFYTAENRSSAPITGVSTHNVAPMKAAIYFNKIQCFCFEEQTLLPGEQID 249

Query: 61  MPVFFYIDPEFETDPKMEGVNNIVLSYTFFKVNDS 95
           MPVFFYIDPEFETDPKMEGVNNIVLSYTFFKVNDS
Sbjct: 250 MPVFFYIDPEFETDPKMEGVNNIVLSYTFFKVNDS 284



>Os03g0718600 Cytochrome c oxidase assembly protein CtaG/Cox11 family protein
          Length = 95

 Score =  196 bits (497), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  VKVKPGESALAFYTAENRSSAPITGVSTYNVAPMKAAIYFNKIQCFCFEEQTLLPGEQID 60
          VKVKPGESALAFYTAENRSSAPITGVSTYNVAPMKAAIYFNKIQCFCFEEQTLLPGEQID
Sbjct: 1  VKVKPGESALAFYTAENRSSAPITGVSTYNVAPMKAAIYFNKIQCFCFEEQTLLPGEQID 60

Query: 61 MPVFFYIDPEFETDPKMEGVNNIVLSYTFFKVNDS 95
          MPVFFYIDPEFETDPKMEGVNNIVLSYTFFKVNDS
Sbjct: 61 MPVFFYIDPEFETDPKMEGVNNIVLSYTFFKVNDS 95



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,830,903
Number of extensions: 93049
Number of successful extensions: 133
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 2
Length of query: 95
Length of database: 17,035,801
Length adjustment: 64
Effective length of query: 31
Effective length of database: 13,694,105
Effective search space: 424517255
Effective search space used: 424517255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)