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Os03g0718600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome c oxidase assembly protein CtaG/Cox11 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0154) R2 : 0.541
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.945 (0.0444) R2dE : 0.585 R2E : 0.535
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0674 (0.0357) R2dN8 : 0.00595 R2N8 : -0.0442
σ : 0.281
deviance : 36.48
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C
peak time of C : --
E
wheather : temperature
threshold : 23.52
memory length : 9052
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.78 0.243 10.3 0.422 0.422 -0.979 0.0213 1.38 0.098 3.53 25.3 8506 -- --
27.82 0.246 10.4 0.0549 0.412 -0.98 0.00636 -- 0.0743 3.73 23.5 8603 -- --
26.76 0.241 10.3 0.427 0.42 -0.98 -- 1.38 0.0986 3.55 25.2 8531 -- --
27.8 0.246 10.4 0.0329 0.408 -0.976 -- -- 0.0677 3.63 23.57 8591 -- --
35.21 0.276 10.3 0.496 -- -0.983 -- 1.57 0.131 -- 25.3 8995 -- --
59.49 0.362 10.5 -0.503 0.355 -- -0.0714 -- -0.353 3.82 -- -- -- --
59.5 0.361 10.5 -0.502 0.354 -- -- -- -0.353 3.8 -- -- -- --
36.44 0.281 10.4 0.0451 -- -0.961 -- -- 0.0784 -- 23.53 9044 -- --
27.83 0.246 10.4 -- 0.405 -0.971 -- -- 0.063 3.62 23.57 8591 -- --
66.42 0.381 10.5 -0.488 -- -- -- -- -0.343 -- -- -- -- --
66.15 0.38 10.5 -- 0.345 -- -- -- -0.297 3.82 -- -- -- --
36.48 0.281 10.4 -- -- -0.945 -- -- 0.0674 -- 23.52 9052 -- --
72.69 0.398 10.5 -- -- -- -- -- -0.289 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.22 radiation 1 1440 < th dose dependent rect. 18 11
8 26.56 radiation 1 1440 < th dose dependent rect. 18 1
10 26.58 radiation 1 14400 < th dose dependent rect. 2 3
12 26.61 radiation 1 14400 < th dose dependent rect. 4 1
15 27.17 wind 5 43200 > th dose dependent rect. 9 7
20 27.28 wind 5 43200 > th dose dependent rect. 5 11
21 27.30 wind 7 43200 < th dose independent rect. 4 12
23 27.31 radiation 1 14400 > th dose independent rect. 18 1
35 27.33 wind 7 43200 > th dose independent rect. 4 12
38 27.36 wind 7 43200 > th dose independent rect. 2 14
48 27.48 wind 7 43200 > th dose independent rect. 23 17
52 27.49 wind 7 43200 < th dose independent rect. 24 16
70 27.65 wind 7 43200 > th dose independent sin 3 NA
71 27.66 wind 7 43200 < th dose independent sin 2 NA
111 27.86 wind 5 43200 > th dose dependent sin 1 NA
129 27.96 wind 7 43200 > th dose dependent rect. 10 4
131 27.97 wind 7 43200 > th dose dependent rect. 9 12
154 28.08 radiation 1 14400 < th dose dependent rect. 18 1
157 28.09 radiation 1 14400 < th dose dependent rect. 18 5
162 28.12 wind 7 43200 > th dose independent rect. 20 20
185 28.22 wind 7 43200 > th dose dependent sin 21 NA
197 28.26 wind 7 43200 < th dose independent rect. 20 20
200 28.27 temperature 25 4320 < th dose independent rect. 6 6
210 28.32 radiation 1 14400 < th dose dependent rect. 18 9
217 28.34 temperature 25 1440 > th dose dependent rect. 16 3
227 28.38 temperature 20 1440 > th dose dependent rect. 18 1
251 28.50 wind 5 43200 > th dose dependent rect. 5 17
252 28.51 wind 9 43200 < th dose independent rect. 9 6
258 28.53 radiation 1 14400 < th dose independent rect. 18 11
262 28.54 radiation 1 14400 < th dose independent rect. 18 9
267 28.55 radiation 1 14400 < th dose independent rect. 18 6
278 28.56 wind 7 43200 > th dose dependent rect. 10 21
287 28.59 radiation 1 14400 < th dose independent rect. 18 1
355 28.70 temperature 25 4320 > th dose independent rect. 6 6
377 28.72 wind 5 43200 > th dose dependent rect. 20 21
416 28.78 wind 9 43200 > th dose independent rect. 9 12
428 28.79 radiation 30 14400 < th dose dependent rect. 18 11
432 28.80 wind 7 43200 > th dose independent rect. 23 22
437 28.81 humidity 90 43200 > th dose independent rect. 22 1
457 28.83 wind 3 43200 > th dose dependent rect. 20 1
536 28.93 radiation 30 14400 < th dose dependent rect. 18 6
548 28.94 radiation 40 14400 < th dose dependent rect. 18 9
574 28.97 temperature 20 1440 > th dose dependent rect. 6 2
578 28.98 wind 9 43200 < th dose independent rect. 9 12
589 28.99 wind 9 43200 > th dose independent rect. 9 16
606 29.00 wind 9 43200 > th dose independent rect. 9 18
608 29.00 temperature 20 14400 > th dose dependent rect. 17 1
609 29.00 wind 7 43200 < th dose dependent rect. 20 2
629 29.02 humidity 90 43200 < th dose independent rect. 10 1
631 29.02 radiation 30 14400 > th dose independent rect. 16 16
663 29.05 wind 9 43200 > th dose independent rect. 9 21
692 29.08 wind 9 43200 < th dose independent rect. 9 21
700 29.09 wind 9 43200 < th dose independent rect. 9 18
712 29.10 wind 7 43200 > th dose independent rect. 9 23
713 29.10 wind 3 43200 > th dose dependent rect. 11 1
726 29.11 wind 9 43200 < th dose dependent rect. 11 1
734 29.12 wind 9 43200 < th dose independent rect. 9 16
784 29.17 wind 7 43200 > th dose independent no NA NA
805 29.19 wind 7 43200 < th dose independent no NA NA
873 29.26 humidity 90 43200 > th dose dependent rect. 21 2
920 29.33 temperature 25 4320 < th dose independent rect. 7 1
930 29.33 temperature 20 1440 > th dose dependent rect. 5 18
932 29.34 wind 7 43200 > th dose independent rect. 10 2
943 29.34 wind 5 43200 > th dose dependent no NA NA
954 29.35 temperature 25 1440 > th dose dependent rect. 6 14
995 29.39 wind 9 43200 > th dose independent rect. 13 19