BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0717300 Os03g0717300|Os03g0717300
(116 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0717300 213 4e-56
Os09g0434600 Conserved hypothetical protein 105 5e-24
Os12g0183500 100 2e-22
Os02g0806500 Conserved hypothetical protein 99 7e-22
>Os03g0717300
Length = 116
Score = 213 bits (541), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 103/116 (88%), Positives = 103/116 (88%)
Query: 1 MATLHPTSLPNWNRMRISVNIITQNXXXXXXXXXXXXXNACYVGDEVVPISFNMDSRVDA 60
MATLHPTSLPNWNRMRISVNIITQN NACYVGDEVVPISFNMDSRVDA
Sbjct: 1 MATLHPTSLPNWNRMRISVNIITQNRAKSLRRLLASLRNACYVGDEVVPISFNMDSRVDA 60
Query: 61 ATLNAVNSFDAEPQQDMSMVMNLLYIKQHQACALSSSTTAGRWNPSWTTCSGRPAS 116
ATLNAVNSFDAEPQQDMSMVMNLLYIKQHQACALSSSTTAGRWNPSWTTCSGRPAS
Sbjct: 61 ATLNAVNSFDAEPQQDMSMVMNLLYIKQHQACALSSSTTAGRWNPSWTTCSGRPAS 116
>Os09g0434600 Conserved hypothetical protein
Length = 90
Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 54/73 (73%)
Query: 1 MATLHPTSLPNWNRMRISVNIITQNXXXXXXXXXXXXXNACYVGDEVVPISFNMDSRVDA 60
MATL PTSLPNWNRMRISVN ITQN N YV DEVVPISFNMDSRVDA
Sbjct: 15 MATLSPTSLPNWNRMRISVNTITQNRAKSLRRLLASLRNTYYVDDEVVPISFNMDSRVDA 74
Query: 61 ATLNAVNSFDAEP 73
ATLNAVNS DAEP
Sbjct: 75 ATLNAVNSSDAEP 87
>Os12g0183500
Length = 580
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 1 MATLHPTSLPNWNRMRISVNIITQNXXXXXXXXXXXXXNACYVGDEVVPISFNMDSRVDA 60
MATLHPTSLPNWNRMRIS NIITQN N YVGDE VPISFNMDSRVDA
Sbjct: 373 MATLHPTSLPNWNRMRISGNIITQNRAKSLRRLLASLRNTYYVGDE-VPISFNMDSRVDA 431
Query: 61 ATLNAVNSFD 70
ATLN VNSFD
Sbjct: 432 ATLNTVNSFD 441
>Os02g0806500 Conserved hypothetical protein
Length = 928
Score = 99.0 bits (245), Expect = 7e-22, Method: Composition-based stats.
Identities = 50/70 (71%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 1 MATLHPTSLPNWNRMRISVNIITQNXXXXXXXXXXXXXNACYVGDEVVPISFNMDSRVDA 60
MA L PTSLPNWNRMRISVNIITQN +A YVGDE VPISFNMDSRVDA
Sbjct: 577 MANLRPTSLPNWNRMRISVNIITQNRAKSLRRLLASLRDAYYVGDE-VPISFNMDSRVDA 635
Query: 61 ATLNAVNSFD 70
ATLN VN+FD
Sbjct: 636 ATLNVVNAFD 645
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.125 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,417,785
Number of extensions: 90398
Number of successful extensions: 210
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 4
Length of query: 116
Length of database: 17,035,801
Length adjustment: 83
Effective length of query: 33
Effective length of database: 12,702,039
Effective search space: 419167287
Effective search space used: 419167287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)