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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0717300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0397) R2 : 0.00573
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.135 (0.0835) R2dN8 : 0.00741 R2N8 : 0.00573
σ : 0.747
deviance : 256.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
227.23 0.702 2.73 0.125 0.209 -11.9 -0.577 42.2 0.136 4.3 90 10 17 1
240.89 0.728 2.79 -0.046 0.21 2.45 -0.63 -- 0.137 4.34 90 10 17 1
228.06 0.709 2.72 0.129 0.213 -11.9 -- 42.5 0.139 4.94 90.69 10 17.5 1.29
241.9 0.729 2.78 -0.0426 0.213 2.55 -- -- 0.14 4.94 90.28 12 17 1.77
230.43 0.711 2.72 0.14 -- -12 -- 42.5 0.144 -- 90.69 10 17.5 1.29
252.39 0.745 2.79 0.0121 0.169 -- -0.901 -- 0.129 4.37 -- -- -- --
254.61 0.747 2.79 0.0199 0.164 -- -- -- 0.134 4.59 -- -- -- --
244.26 0.731 2.79 -0.0322 -- 2.44 -- -- 0.146 -- 90.69 10 17.5 1.29
230.32 0.707 2.83 -- 0.157 3.97 -- -- 0.107 4.17 93 6 16 2.03
256.04 0.748 2.79 0.0262 -- -- -- -- 0.138 -- -- -- -- --
254.62 0.746 2.79 -- 0.164 -- -- -- 0.132 4.58 -- -- -- --
230.52 0.707 2.79 -- -- 5.06 -- -- 0.15 -- 92.01 5 16.5 2.92
256.06 0.747 2.79 -- -- -- -- -- 0.135 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 227.23 humidity 90.0 10 > th dose independent rect. 17 1
4 227.23 precipitation 0.1 10 > th dose independent rect. 17 1
39 227.23 humidity 90.0 10 > th dose dependent rect. 17 1
42 227.23 precipitation 0.1 10 > th dose dependent rect. 17 1
111 234.52 humidity 80.0 10 > th dose independent rect. 10 1
113 234.78 humidity 80.0 10 > th dose dependent rect. 10 1
125 238.36 atmosphere 1005.0 90 < th dose dependent rect. 8 1
142 238.81 wind 1.0 10 < th dose independent rect. 6 1
145 239.09 radiation 1.0 90 < th dose independent rect. 16 1
156 239.60 radiation 1.0 43200 < th dose dependent rect. 3 1
173 240.61 humidity 90.0 270 > th dose dependent rect. 14 1
174 240.62 humidity 90.0 270 > th dose independent rect. 14 1
185 240.78 humidity 90.0 30 > th dose independent rect. 2 1
186 240.79 humidity 80.0 30 > th dose dependent rect. 2 1
198 240.97 wind 5.0 30 < th dose independent rect. 2 1
201 241.01 wind 9.0 30 < th dose dependent rect. 2 1
203 241.02 temperature 10.0 30 > th dose independent rect. 2 1
205 241.02 temperature 30.0 30 < th dose independent rect. 2 1
206 241.02 humidity 50.0 30 > th dose independent rect. 2 1
209 241.02 atmosphere 995.0 30 > th dose independent rect. 2 1
210 241.02 atmosphere 1010.0 30 < th dose independent rect. 2 1
212 241.02 radiation 1.0 30 < th dose independent rect. 2 1
217 241.02 precipitation 0.1 30 < th dose independent rect. 2 1
218 241.02 temperature 10.0 30 > th dose independent rect. 3 23
220 241.02 radiation 1.0 30 < th dose dependent rect. 2 1
225 241.02 precipitation 0.1 30 < th dose dependent rect. 2 1
227 241.05 atmosphere 1015.0 30 < th dose dependent rect. 2 1
229 241.06 temperature 10.0 30 > th dose dependent rect. 2 1
231 241.07 atmosphere 995.0 30 > th dose dependent rect. 2 1
238 241.12 temperature 30.0 30 < th dose dependent rect. 2 1
243 241.23 radiation 1.0 4320 < th dose dependent rect. 3 1
248 241.35 wind 1.0 30 < th dose independent rect. 2 1
249 241.35 radiation 10.0 270 < th dose dependent rect. 14 1
254 241.40 temperature 25.0 90 < th dose independent rect. 16 1
255 241.46 wind 1.0 30 > th dose independent rect. 2 1
293 241.91 wind 9.0 1440 < th dose independent rect. 3 1
294 241.91 temperature 10.0 1440 > th dose independent rect. 3 1
297 241.91 temperature 30.0 1440 < th dose independent rect. 3 1
301 241.91 humidity 50.0 1440 > th dose independent rect. 3 1
310 241.91 atmosphere 995.0 1440 > th dose independent rect. 3 1
311 241.91 radiation 1.0 1440 < th dose independent rect. 3 1
331 241.91 temperature 10.0 1440 > th dose independent rect. 4 23
363 241.95 radiation 1.0 30 < th dose dependent rect. 5 13
372 242.62 atmosphere 995.0 30 > th dose independent rect. 3 23
373 242.63 temperature 25.0 90 < th dose dependent rect. 16 1
383 242.80 radiation 1.0 90 < th dose independent rect. 10 7
426 243.40 temperature 25.0 270 < th dose dependent rect. 13 4
439 243.79 wind 9.0 30 < th dose independent rect. 3 23
446 243.89 wind 1.0 10 < th dose dependent rect. 6 1
449 243.90 temperature 25.0 270 < th dose dependent rect. 14 1
450 243.91 precipitation 0.1 270 > th dose independent rect. 2 1
452 243.91 precipitation 0.1 270 > th dose dependent rect. 2 1
453 243.94 temperature 25.0 270 < th dose independent rect. 13 4
457 243.99 humidity 80.0 270 > th dose dependent rect. 11 7
459 244.06 radiation 1.0 90 < th dose independent rect. 5 13
483 244.39 temperature 25.0 270 > th dose dependent rect. 23 8
490 244.50 precipitation 0.1 30 < th dose independent rect. 3 23
491 244.50 precipitation 0.1 30 < th dose dependent rect. 3 23
493 244.54 radiation 40.0 4320 < th dose independent rect. 9 1
494 244.54 temperature 25.0 1440 > th dose independent rect. 23 4
495 244.55 radiation 30.0 4320 > th dose independent rect. 9 1
496 244.56 temperature 25.0 1440 > th dose independent rect. 23 9
512 244.69 temperature 25.0 1440 > th dose dependent rect. 23 9
517 244.74 temperature 25.0 1440 < th dose independent rect. 23 9
525 244.85 temperature 25.0 1440 < th dose independent rect. 23 3
573 245.06 temperature 25.0 1440 > th dose dependent rect. 24 3
579 245.09 radiation 30.0 4320 > th dose dependent rect. 9 1
582 245.11 atmosphere 1005.0 90 < th dose independent rect. 4 6
598 245.21 temperature 25.0 270 > th dose independent rect. 23 8
613 245.27 atmosphere 1005.0 10 < th dose independent rect. 5 6
615 245.27 atmosphere 1005.0 270 < th dose dependent rect. 6 1
626 245.33 wind 3.0 30 < th dose dependent rect. 9 18
633 245.37 temperature 20.0 10 < th dose dependent rect. 6 3
639 245.39 humidity 70.0 1440 > th dose dependent rect. 18 3
658 245.45 humidity 70.0 1440 > th dose dependent rect. 19 1
665 245.48 humidity 80.0 720 > th dose independent rect. 22 12
669 245.49 radiation 1.0 30 < th dose dependent rect. 5 1
682 245.53 humidity 70.0 1440 > th dose dependent rect. 18 5
684 245.53 humidity 50.0 720 > th dose dependent rect. 22 12
686 245.54 humidity 50.0 1440 > th dose dependent rect. 18 5
688 245.55 temperature 25.0 270 > th dose independent rect. 23 5
717 245.65 wind 3.0 30 < th dose dependent rect. 6 21
737 245.71 humidity 90.0 1440 < th dose independent rect. 19 1
743 245.72 temperature 20.0 10 < th dose independent rect. 6 3
755 245.75 radiation 40.0 4320 > th dose independent rect. 7 3
774 245.76 humidity 90.0 1440 < th dose dependent rect. 18 5
793 245.79 atmosphere 1005.0 30 > th dose dependent rect. 3 6
802 245.81 humidity 90.0 4320 < th dose dependent rect. 18 9
812 245.83 humidity 90.0 1440 < th dose dependent rect. 19 2
838 245.91 atmosphere 1005.0 270 > th dose dependent rect. 3 2
851 245.93 temperature 25.0 270 < th dose independent rect. 13 17
913 246.06 temperature 20.0 10 < th dose dependent rect. 5 6
966 246.16 humidity 80.0 1440 < th dose independent rect. 13 9