BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0715500 Os03g0715500|AK071327
(984 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0715500 WD40-like domain containing protein 1946 0.0
Os09g0426950 97 4e-20
>Os03g0715500 WD40-like domain containing protein
Length = 984
Score = 1946 bits (5042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 951/984 (96%), Positives = 951/984 (96%)
Query: 1 MVHSAYDAVELVSGVPGDIVAVAAYAGRLLVAGKDGSLRIYASPGHAGGGIPRDGPYALE 60
MVHSAYDAVELVSGVPGDIVAVAAYAGRLLVAGKDGSLRIYASPGHAGGGIPRDGPYALE
Sbjct: 1 MVHSAYDAVELVSGVPGDIVAVAAYAGRLLVAGKDGSLRIYASPGHAGGGIPRDGPYALE 60
Query: 61 RQQPSLWRRGTPLAMEVSAGRELLLSLAECVNLHRLPGLETVAVIGKTKGANLFAWDDRR 120
RQQPSLWRRGTPLAMEVSAGRELLLSLAECVNLHRLPGLETVAVIGKTKGANLFAWDDRR
Sbjct: 61 RQQPSLWRRGTPLAMEVSAGRELLLSLAECVNLHRLPGLETVAVIGKTKGANLFAWDDRR 120
Query: 121 GLLAVGRWKRLTIFRLDSGREFVEVKEFGVPDTVKSMAWCGDNICLGIRKEYMIINSMTG 180
GLLAVGRWKRLTIFRLDSGREFVEVKEFGVPDTVKSMAWCGDNICLGIRKEYMIINSMTG
Sbjct: 121 GLLAVGRWKRLTIFRLDSGREFVEVKEFGVPDTVKSMAWCGDNICLGIRKEYMIINSMTG 180
Query: 181 ALTEVFSSGRNAPPLVVALPTGELLLGKDNIGVFVDQNGKLIQDGRIIWSDTPASVAIHR 240
ALTEVFSSGRNAPPLVVALPTGELLLGKDNIGVFVDQNGKLIQDGRIIWSDTPASVAIHR
Sbjct: 181 ALTEVFSSGRNAPPLVVALPTGELLLGKDNIGVFVDQNGKLIQDGRIIWSDTPASVAIHR 240
Query: 241 PYAVARLPRHVEIRSLRAPNALVQTVVLRDVQKLVETENCILAVLARSVYGLLPVPIGAQ 300
PYAVARLPRHVEIRSLRAPNALVQTVVLRDVQKLVETENCILAVLARSVYGLLPVPIGAQ
Sbjct: 241 PYAVARLPRHVEIRSLRAPNALVQTVVLRDVQKLVETENCILAVLARSVYGLLPVPIGAQ 300
Query: 301 IVQLTASGEFEEALALCKLLPPEDSNLRAAKESSIHIRYGHFLFDNGSYEEAMEQFSDSH 360
IVQLTASGEFEEALALCKLLPPEDSNLRAAKESSIHIRYGHFLFDNGSYEEAMEQFSDSH
Sbjct: 301 IVQLTASGEFEEALALCKLLPPEDSNLRAAKESSIHIRYGHFLFDNGSYEEAMEQFSDSH 360
Query: 361 VDITYVLSLYPSLVLPQTHIIGEHDRLQDLPELARESSDVTDDMEPYSLQLHESDDKSPL 420
VDITYVLSLYPSLVLPQTHIIGEHDRLQDLPELARESSDVTDDMEPYSLQLHESDDKSPL
Sbjct: 361 VDITYVLSLYPSLVLPQTHIIGEHDRLQDLPELARESSDVTDDMEPYSLQLHESDDKSPL 420
Query: 421 EIKKMSHNALIALVKYLHKKRNGIIERXXXXXXXXXXSGAVHHSSILSESYRSKKPNKKR 480
EIKKMSHNALIALVKYLHKKRNGIIER SGAVHHSSILSESYRSKKPNKKR
Sbjct: 421 EIKKMSHNALIALVKYLHKKRNGIIERATAEVTEEVVSGAVHHSSILSESYRSKKPNKKR 480
Query: 481 AQTHTSSIAREMATVLDTSLLQALILTGQSSGAIELLKGLNYCDLKICKEFLEERSDYMV 540
AQTHTSSIAREMATVLDTSLLQALILTGQSSGAIELLKGLNYCDLKICKEFLEERSDYMV
Sbjct: 481 AQTHTSSIAREMATVLDTSLLQALILTGQSSGAIELLKGLNYCDLKICKEFLEERSDYMV 540
Query: 541 LLELYKSNEMHREALQLLNQLVEESKAEMGKNDFNKKFNPQMIIEYLRPLCRSDPMLVLE 600
LLELYKSNEMHREALQLLNQLVEESKAEMGKNDFNKKFNPQMIIEYLRPLCRSDPMLVLE
Sbjct: 541 LLELYKSNEMHREALQLLNQLVEESKAEMGKNDFNKKFNPQMIIEYLRPLCRSDPMLVLE 600
Query: 601 SSLYVLERNPSDTIELFLSENVPADLVNSYLKQHAPNLQSTYLELMLSMSVSGINPNLQN 660
SSLYVLERNPSDTIELFLSENVPADLVNSYLKQHAPNLQSTYLELMLSMSVSGINPNLQN
Sbjct: 601 SSLYVLERNPSDTIELFLSENVPADLVNSYLKQHAPNLQSTYLELMLSMSVSGINPNLQN 660
Query: 661 ELVQLYLSEVLDWHKILKEEGNWTEKTYSPTRKKLITTLENNSGYNTDILLKRLPQDALF 720
ELVQLYLSEVLDWHKILKEEGNWTEKTYSPTRKKLITTLENNSGYNTDILLKRLPQDALF
Sbjct: 661 ELVQLYLSEVLDWHKILKEEGNWTEKTYSPTRKKLITTLENNSGYNTDILLKRLPQDALF 720
Query: 721 EERAILYGKINQHLRALSLYVHKLQMPERAVAYCDRVYEEGAQQPSKSNIYFNLLQIYLN 780
EERAILYGKINQHLRALSLYVHKLQMPERAVAYCDRVYEEGAQQPSKSNIYFNLLQIYLN
Sbjct: 721 EERAILYGKINQHLRALSLYVHKLQMPERAVAYCDRVYEEGAQQPSKSNIYFNLLQIYLN 780
Query: 781 PRKAEKEFEQKIVPVASQYPGIQKVTKVRGARMGKKVVEIEGADDVRFXXXXXXXXXXXX 840
PRKAEKEFEQKIVPVASQYPGIQKVTKVRGARMGKKVVEIEGADDVRF
Sbjct: 781 PRKAEKEFEQKIVPVASQYPGIQKVTKVRGARMGKKVVEIEGADDVRFSPSGTDSGRSDG 840
Query: 841 XXXXXXXXXXXPIMLNEALELLSQRWDRINGAQALRLLPRDTKLQDLVLFLEPLLRNSSE 900
PIMLNEALELLSQRWDRINGAQALRLLPRDTKLQDLVLFLEPLLRNSSE
Sbjct: 841 DGDGDDVSDGGPIMLNEALELLSQRWDRINGAQALRLLPRDTKLQDLVLFLEPLLRNSSE 900
Query: 901 HRRNYMVIKNLIFRANLQVKEDLYKRRQAVLKIDGDSMCSLCHKRIANSAFAIYPNGQTL 960
HRRNYMVIKNLIFRANLQVKEDLYKRRQAVLKIDGDSMCSLCHKRIANSAFAIYPNGQTL
Sbjct: 901 HRRNYMVIKNLIFRANLQVKEDLYKRRQAVLKIDGDSMCSLCHKRIANSAFAIYPNGQTL 960
Query: 961 VHFVCFRESQQIKAVRGVNSVKRR 984
VHFVCFRESQQIKAVRGVNSVKRR
Sbjct: 961 VHFVCFRESQQIKAVRGVNSVKRR 984
>Os09g0426950
Length = 255
Score = 97.4 bits (241), Expect = 4e-20, Method: Composition-based stats.
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 91 VNLHRLPGLETVAVIGKTKGANLFAWDDRRGLLAVGRWKRLTIFRLDS 138
VNLHRLPGLETVA+IGKT GANLFAWDDRRGLLAVG WKRLTIFRLD+
Sbjct: 122 VNLHRLPGLETVAIIGKTNGANLFAWDDRRGLLAVGCWKRLTIFRLDN 169
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,707,986
Number of extensions: 1270768
Number of successful extensions: 3122
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3122
Number of HSP's successfully gapped: 2
Length of query: 984
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 874
Effective length of database: 11,292,261
Effective search space: 9869436114
Effective search space used: 9869436114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)