BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0713400 Os03g0713400|AK071307
         (747 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0713400  Similar to NADH-ubiquinone oxidoreductase 75 k...  1362   0.0  

>Os03g0713400 Similar to NADH-ubiquinone oxidoreductase 75 kDa subunit,
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-75KD) (CI-75KD) (76 kDa mitochondrial complex
           I subunit)
          Length = 747

 Score = 1362 bits (3525), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 669/747 (89%), Positives = 669/747 (89%)

Query: 1   MAFFARAIRYSSPYLRSRXXXXXXXXXSCRWIXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAFFARAIRYSSPYLRSR         SCRWI                            
Sbjct: 1   MAFFARAIRYSSPYLRSRAPPPPAVAASCRWISPTAAAGSPEAGAAVAPADPETPPPREP 60

Query: 61  XGGARVELPSNPEDALEVFVDGHAVRIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCR 120
            GGARVELPSNPEDALEVFVDGHAVRIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCR
Sbjct: 61  VGGARVELPSNPEDALEVFVDGHAVRIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCR 120

Query: 121 MCLVEVEKSPKPVASCAMPALPGMKIKTNTPVAKKAREGVMEFLLMNHPLDCPICDQGGE 180
           MCLVEVEKSPKPVASCAMPALPGMKIKTNTPVAKKAREGVMEFLLMNHPLDCPICDQGGE
Sbjct: 121 MCLVEVEKSPKPVASCAMPALPGMKIKTNTPVAKKAREGVMEFLLMNHPLDCPICDQGGE 180

Query: 181 CDLQDQSMAFGADRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEVAGVQDLG 240
           CDLQDQSMAFGADRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEVAGVQDLG
Sbjct: 181 CDLQDQSMAFGADRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEVAGVQDLG 240

Query: 241 MLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDA 300
           MLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDA
Sbjct: 241 MLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDA 300

Query: 301 VGSNIRVDSRGPEVMRIVPRLNEDINEEWISDKTRFCYDGLKRQRLNDPMIRGTDGRFKA 360
           VGSNIRVDSRGPEVMRIVPRLNEDINEEWISDKTRFCYDGLKRQRLNDPMIRGTDGRFKA
Sbjct: 301 VGSNIRVDSRGPEVMRIVPRLNEDINEEWISDKTRFCYDGLKRQRLNDPMIRGTDGRFKA 360

Query: 361 VTWRDXXXXXXXXXXXXKPEEITGVAGKLSDAESMMALKDFVNKMGSDKVLCEGNGPSPP 420
           VTWRD            KPEEITGVAGKLSDAESMMALKDFVNKMGSDKVLCEGNGPSPP
Sbjct: 361 VTWRDALAVVAEVLQQVKPEEITGVAGKLSDAESMMALKDFVNKMGSDKVLCEGNGPSPP 420

Query: 421 ADLRSNYLMNTSIAGLEKADVFLLVGTQPRVEAAMVNARIRKTVRATQAKVAYIGPPTDF 480
           ADLRSNYLMNTSIAGLEKADVFLLVGTQPRVEAAMVNARIRKTVRATQAKVAYIGPPTDF
Sbjct: 421 ADLRSNYLMNTSIAGLEKADVFLLVGTQPRVEAAMVNARIRKTVRATQAKVAYIGPPTDF 480

Query: 481 NYDHEHLGTGPQTLVEIAEGRHPFCSTLQSAKNPVIIAGAGLFDREDQDALFSTIETVAK 540
           NYDHEHLGTGPQTLVEIAEGRHPFCSTLQSAKNPVIIAGAGLFDREDQDALFSTIETVAK
Sbjct: 481 NYDHEHLGTGPQTLVEIAEGRHPFCSTLQSAKNPVIIAGAGLFDREDQDALFSTIETVAK 540

Query: 541 KFNVVRPDWNGLNVXXXXXXXXXXXXXXXXXNPTESIKSTKFLYLMGAXXXXXXXXXXXA 600
           KFNVVRPDWNGLNV                 NPTESIKSTKFLYLMGA           A
Sbjct: 541 KFNVVRPDWNGLNVLLLHAAQAAALDLGLVANPTESIKSTKFLYLMGADDVDLDKVPDDA 600

Query: 601 FVVYQGHHGDKAVYRANVILPSSAFSEKEGTYENTEGCTQWTIPAVPTVGDARDDWKILR 660
           FVVYQGHHGDKAVYRANVILPSSAFSEKEGTYENTEGCTQWTIPAVPTVGDARDDWKILR
Sbjct: 601 FVVYQGHHGDKAVYRANVILPSSAFSEKEGTYENTEGCTQWTIPAVPTVGDARDDWKILR 660

Query: 661 ALSEVAGAQLPYDSLSGVRDRISMVAPNLVHVDEREPCTISSEVKPPVKQQVSSTPFKTV 720
           ALSEVAGAQLPYDSLSGVRDRISMVAPNLVHVDEREPCTISSEVKPPVKQQVSSTPFKTV
Sbjct: 661 ALSEVAGAQLPYDSLSGVRDRISMVAPNLVHVDEREPCTISSEVKPPVKQQVSSTPFKTV 720

Query: 721 VENFYMTDAITRASKIMAQCSATLLKK 747
           VENFYMTDAITRASKIMAQCSATLLKK
Sbjct: 721 VENFYMTDAITRASKIMAQCSATLLKK 747



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,652,718
Number of extensions: 893530
Number of successful extensions: 1705
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1703
Number of HSP's successfully gapped: 1
Length of query: 747
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 639
Effective length of database: 11,396,689
Effective search space: 7282484271
Effective search space used: 7282484271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)