BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0710900 Os03g0710900|Os03g0710900
         (664 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0710900  Similar to CASP protein-like                       1080   0.0  

>Os03g0710900 Similar to CASP protein-like
          Length = 664

 Score = 1080 bits (2793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/622 (88%), Positives = 549/622 (88%)

Query: 43  FWKDFDLEKERGGLDEQGLKIAENQETSQKNRRRLAESTRDFKKASSDDKLSLFNSLLKS 102
           FWKDFDLEKERGGLDEQGLKIAENQETSQKNRRRLAESTRDFKKASSDDKLSLFNSLLKS
Sbjct: 43  FWKDFDLEKERGGLDEQGLKIAENQETSQKNRRRLAESTRDFKKASSDDKLSLFNSLLKS 102

Query: 103 YQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASMAEQDQKLSELETENRKMKLEL 162
           YQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASMAEQDQKLSELETENRKMKLEL
Sbjct: 103 YQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASMAEQDQKLSELETENRKMKLEL 162

Query: 163 EEYRAEAAHLKNQQATIXXXXXXXXXXXXXXXXXXXXXXXXXXRSLAEDSQKTLEALKDR 222
           EEYRAEAAHLKNQQATI                          RSLAEDSQKTLEALKDR
Sbjct: 163 EEYRAEAAHLKNQQATIRRLEERNRQLEQQMEEKVREMVEMKQRSLAEDSQKTLEALKDR 222

Query: 223 ERALQDQLRQATESVKNMQKLHESAQSQLFELRTQSEEDRAAKETEVNLLLDEVERAQAR 282
           ERALQDQLRQATESVKNMQKLHESAQSQLFELRTQSEEDRAAKETEVNLLLDEVERAQAR
Sbjct: 223 ERALQDQLRQATESVKNMQKLHESAQSQLFELRTQSEEDRAAKETEVNLLLDEVERAQAR 282

Query: 283 LVSLEREKGDLRSQLQTTNEDATNSSDYVDSSDILESSLNAKEKIISELNAELRSIENTL 342
           LVSLEREKGDLRSQLQTTNEDATNSSDYVDSSDILESSLNAKEKIISELNAELRSIENTL
Sbjct: 283 LVSLEREKGDLRSQLQTTNEDATNSSDYVDSSDILESSLNAKEKIISELNAELRSIENTL 342

Query: 343 SSERETHVNELKKLTALLSEKENALTELKKELQERPTRRLVDDLKKKVQILQAVGYNSIE 402
           SSERETHVNELKKLTALLSEKENALTELKKELQERPTRRLVDDLKKKVQILQAVGYNSIE
Sbjct: 343 SSERETHVNELKKLTALLSEKENALTELKKELQERPTRRLVDDLKKKVQILQAVGYNSIE 402

Query: 403 AEDWELATNGEEMSKLEALLLDKNRKMEHELTQLKVKISEKSNXXXXXXXXXXXXXXXXX 462
           AEDWELATNGEEMSKLEALLLDKNRKMEHELTQLKVKISEKSN                 
Sbjct: 403 AEDWELATNGEEMSKLEALLLDKNRKMEHELTQLKVKISEKSNLLEEAEKKIAELTAKAE 462

Query: 463 XQQXXXXXXXXXXXXGYSSTDRRTSLLNDWDLQEIGSNEVAEGTDPRHAPQDQDQSSMLK 522
            QQ            GYSSTDRRTSLLNDWDLQEIGSNEVAEGTDPRHAPQDQDQSSMLK
Sbjct: 463 EQQKLILKLEDDILKGYSSTDRRTSLLNDWDLQEIGSNEVAEGTDPRHAPQDQDQSSMLK 522

Query: 523 VICNQRDRFXXXXXXXXXXXXXXXXXYEMLVVELEKTKADNVQLYGKIRYVQDYSHEKIV 582
           VICNQRDRF                 YEMLVVELEKTKADNVQLYGKIRYVQDYSHEKIV
Sbjct: 523 VICNQRDRFRTRLRETEEELRRLKEKYEMLVVELEKTKADNVQLYGKIRYVQDYSHEKIV 582

Query: 583 SRGPKKYAEDVESGSSDVETKYKKMYEDDINPFAAFSKKEKDQRYKELGLRDKITLSSGR 642
           SRGPKKYAEDVESGSSDVETKYKKMYEDDINPFAAFSKKEKDQRYKELGLRDKITLSSGR
Sbjct: 583 SRGPKKYAEDVESGSSDVETKYKKMYEDDINPFAAFSKKEKDQRYKELGLRDKITLSSGR 642

Query: 643 FLLGNKMSALSYLRYGDGVDGK 664
           FLLGNKMSALSYLRYGDGVDGK
Sbjct: 643 FLLGNKMSALSYLRYGDGVDGK 664



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.125    0.327 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,321,125
Number of extensions: 537315
Number of successful extensions: 2554
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2546
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 557
Effective length of database: 11,448,903
Effective search space: 6377038971
Effective search space used: 6377038971
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 159 (65.9 bits)