BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0699200 Os03g0699200|AK066652
         (604 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0699200  Pescadillo, N-terminal domain containing protein   1160   0.0  

>Os03g0699200 Pescadillo, N-terminal domain containing protein
          Length = 604

 Score = 1160 bits (3000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/604 (93%), Positives = 564/604 (93%)

Query: 1   MPKHYRPAGKKKEGNAAKYITRTKAVKYLQISLATFRKLCILKGVFPRDPKKKVEGNHKT 60
           MPKHYRPAGKKKEGNAAKYITRTKAVKYLQISLATFRKLCILKGVFPRDPKKKVEGNHKT
Sbjct: 1   MPKHYRPAGKKKEGNAAKYITRTKAVKYLQISLATFRKLCILKGVFPRDPKKKVEGNHKT 60

Query: 61  YYHMKDIAFLAHDPLIEKFREIXXXXXXXXXXXXXXXXDLADRLLNRPPTYKLDRLILER 120
           YYHMKDIAFLAHDPLIEKFREI                DLADRLLNRPPTYKLDRLILER
Sbjct: 61  YYHMKDIAFLAHDPLIEKFREIKVHRKKVKKAFAKKNKDLADRLLNRPPTYKLDRLILER 120

Query: 121 YPTFVDALRDLDDCLTMVHLFAALPAVEGERVQVQRIHNCRRLSHEWQAYISRTHSLRKT 180
           YPTFVDALRDLDDCLTMVHLFAALPAVEGERVQVQRIHNCRRLSHEWQAYISRTHSLRKT
Sbjct: 121 YPTFVDALRDLDDCLTMVHLFAALPAVEGERVQVQRIHNCRRLSHEWQAYISRTHSLRKT 180

Query: 181 FISVKGIYYQAEVQGQKITWLTPHALQQVLTDDVDFNVMLTFLEFYETLLGFINFKLYHS 240
           FISVKGIYYQAEVQGQKITWLTPHALQQVLTDDVDFNVMLTFLEFYETLLGFINFKLYHS
Sbjct: 181 FISVKGIYYQAEVQGQKITWLTPHALQQVLTDDVDFNVMLTFLEFYETLLGFINFKLYHS 240

Query: 241 INVNYPPVLDPRLEALASELYALCRYMSSGRVPGNSEPAGLIEDKEGEDNKESSKTDESE 300
           INVNYPPVLDPRLEALASELYALCRYMSSGRVPGNSEPAGLIEDKEGEDNKESSKTDESE
Sbjct: 241 INVNYPPVLDPRLEALASELYALCRYMSSGRVPGNSEPAGLIEDKEGEDNKESSKTDESE 300

Query: 301 LRLAQLQHQLPTNEPGALMHLVQESTXXXXXXXXXKECRSLFKNLKFYLSREVPRESLLF 360
           LRLAQLQHQLPTNEPGALMHLVQEST         KECRSLFKNLKFYLSREVPRESLLF
Sbjct: 301 LRLAQLQHQLPTNEPGALMHLVQESTAADADDADAKECRSLFKNLKFYLSREVPRESLLF 360

Query: 361 IIPAFGGTVSWEGEGAPFDETDEDITHQIVDRPTQSHVFLSREYVQPQWIYDCVNARIIL 420
           IIPAFGGTVSWEGEGAPFDETDEDITHQIVDRPTQSHVFLSREYVQPQWIYDCVNARIIL
Sbjct: 361 IIPAFGGTVSWEGEGAPFDETDEDITHQIVDRPTQSHVFLSREYVQPQWIYDCVNARIIL 420

Query: 421 PTEGYIVGRVPPPHLSPFVDNDAEGYIPEYAETIKRLQAAAQSQVLPLPSLGDEDMENSL 480
           PTEGYIVGRVPPPHLSPFVDNDAEGYIPEYAETIKRLQAAAQSQVLPLPSLGDEDMENSL
Sbjct: 421 PTEGYIVGRVPPPHLSPFVDNDAEGYIPEYAETIKRLQAAAQSQVLPLPSLGDEDMENSL 480

Query: 481 VEAIIDRSESNEIADKKRKLEMLEKQYHDELRMEYEGKTFSNRTADNQPDVVDKSDTKEA 540
           VEAIIDRSESNEIADKKRKLEMLEKQYHDELRMEYEGKTFSNRTADNQPDVVDKSDTKEA
Sbjct: 481 VEAIIDRSESNEIADKKRKLEMLEKQYHDELRMEYEGKTFSNRTADNQPDVVDKSDTKEA 540

Query: 541 DDHMEDSHKQAEKDAADISKTLMSRKQRGLLQAIEINQEXXXXXXXXXXXXXXXADSSAS 600
           DDHMEDSHKQAEKDAADISKTLMSRKQRGLLQAIEINQE               ADSSAS
Sbjct: 541 DDHMEDSHKQAEKDAADISKTLMSRKQRGLLQAIEINQERKKDKVNLLKKRKKNADSSAS 600

Query: 601 AKGR 604
           AKGR
Sbjct: 601 AKGR 604



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,466,406
Number of extensions: 809119
Number of successful extensions: 2386
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2385
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 497
Effective length of database: 11,448,903
Effective search space: 5690104791
Effective search space used: 5690104791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)