BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0696000 Os03g0696000|AK109661
         (226 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0696000  Harpin-induced 1 domain containing protein          315   2e-86
Os07g0206800  Harpin-induced 1 domain containing protein           79   2e-15

>Os03g0696000 Harpin-induced 1 domain containing protein
          Length = 226

 Score =  315 bits (806), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 165/202 (81%), Positives = 165/202 (81%)

Query: 25  DARAGADANADSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWPADPDVSVA 84
           DARAGADANADSY                                     WPADPDVSVA
Sbjct: 25  DARAGADANADSYVLLVPVRLRRLRRGCRCRCLGPLLSTLALLSLAGFLLWPADPDVSVA 84

Query: 85  RLRLAHVSVSARPTVRVTISAALKVRVRNPDLFALDYGRLDVDIGYRGAPLGRVTSGGGR 144
           RLRLAHVSVSARPTVRVTISAALKVRVRNPDLFALDYGRLDVDIGYRGAPLGRVTSGGGR
Sbjct: 85  RLRLAHVSVSARPTVRVTISAALKVRVRNPDLFALDYGRLDVDIGYRGAPLGRVTSGGGR 144

Query: 145 VRARAVSYIDANLSLDGISVVEDAIYLLEDLARGSVPFDTVAEVEGHVHLFFLSIPVKGR 204
           VRARAVSYIDANLSLDGISVVEDAIYLLEDLARGSVPFDTVAEVEGHVHLFFLSIPVKGR
Sbjct: 145 VRARAVSYIDANLSLDGISVVEDAIYLLEDLARGSVPFDTVAEVEGHVHLFFLSIPVKGR 204

Query: 205 ISCVVHINPHNQTIVHQDCYPD 226
           ISCVVHINPHNQTIVHQDCYPD
Sbjct: 205 ISCVVHINPHNQTIVHQDCYPD 226



>Os07g0206800 Harpin-induced 1 domain containing protein
          Length = 237

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 71/131 (54%), Gaps = 3/131 (2%)

Query: 75  WPADPDVSVARLRLAHVSVSARPTVRVTISAALKVRVRNPDL-FALDYGRLDVDIGYRGA 133
           +P+ P   V  LRL    V+  P   V +  AL++RVRNP L   L Y  +   + YRG 
Sbjct: 105 YPSAPVARVEGLRLDRFRVNPPPLPSVDLHLALRLRVRNPGLVLPLRYRAVSAAVSYRGH 164

Query: 134 PLGRVTS--GGGRVRARAVSYIDANLSLDGISVVEDAIYLLEDLARGSVPFDTVAEVEGH 191
            LG   +  G G + AR  +Y DA + +D   VV+D I L+ DLA GS+P + V EV G 
Sbjct: 165 LLGSAAARPGSGELGARGTTYADAEVWVDAGRVVDDVIDLIGDLAAGSLPLEIVTEVVGA 224

Query: 192 VHLFFLSIPVK 202
           V +F   IPVK
Sbjct: 225 VRVFRFDIPVK 235



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,570,101
Number of extensions: 205965
Number of successful extensions: 541
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 129
Effective length of database: 11,971,043
Effective search space: 1544264547
Effective search space used: 1544264547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)