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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0696000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Harpin-induced 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.8 (0.0226) R2 : 0.651
β1 : 0.912 (0.0828) R2dD : 0.0963 R2D : 0.0852
β2 : 1.49 (0.0549) R2dC : 0.564 R2C : 0.557
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0412 (0.0483) R2dN8 : 0.000748 R2N8 : -0.00535
σ : 0.425
deviance : 82.42
__
_____
C
peak time of C : 9.92
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
70.24 0.394 9.79 0.777 1.59 0.744 -0.283 -0.218 0.0738 10.2 78.03 1210 -- --
70.14 0.39 9.78 0.789 1.6 0.739 -0.249 -- 0.0917 10.1 75.02 1167 -- --
70.36 0.391 9.79 0.78 1.6 0.752 -- -0.138 0.0853 10.1 75.12 1171 -- --
70.38 0.391 9.78 0.778 1.6 0.744 -- -- 0.0924 10.1 74.85 1161 -- --
191.05 0.647 9.83 0.871 -- 0.961 -- -0.561 0.0841 -- 84.05 1528 -- --
81.94 0.424 9.8 0.926 1.48 -- -0.353 -- 0.0421 9.93 -- -- -- --
82.42 0.425 9.8 0.912 1.49 -- -- -- 0.0412 9.92 -- -- -- --
191.6 0.648 9.83 0.872 -- 0.946 -- -- 0.0832 -- 84.05 1528 -- --
85.74 0.431 9.79 -- 1.61 0.899 -- -- 0.0483 10.1 73.61 1162 -- --
214.99 0.685 9.84 0.895 -- -- -- -- 0.0411 -- -- -- -- --
104.34 0.478 9.82 -- 1.48 -- -- -- -0.0603 9.87 -- -- -- --
211.66 0.68 9.85 -- -- 0.968 -- -- -0.0125 -- 84.05 1528 -- --
236.13 0.717 9.86 -- -- -- -- -- -0.0582 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 68.75 humidity 70 720 > th dose independent rect. 16 11
3 69.49 humidity 50 720 > th dose dependent rect. 16 11
4 69.51 radiation 20 4320 > th dose dependent rect. 7 1
5 69.59 temperature 10 270 > th dose dependent rect. 22 14
22 69.70 radiation 20 4320 > th dose independent rect. 7 1
39 69.92 humidity 70 720 > th dose independent rect. 16 3
41 69.97 temperature 20 30 > th dose independent rect. 9 19
42 70.02 atmosphere 1010 30 < th dose independent rect. 9 19
45 70.09 wind 1 43200 > th dose dependent rect. 21 7
59 70.10 humidity 70 720 > th dose independent rect. 16 17
65 70.23 wind 9 43200 < th dose dependent rect. 21 7
70 70.40 temperature 30 720 < th dose independent rect. 16 11
73 70.43 wind 3 43200 > th dose independent rect. 21 7
74 70.44 humidity 90 720 < th dose dependent rect. 19 2
75 70.46 temperature 20 270 > th dose dependent rect. 7 5
77 70.50 wind 1 90 < th dose independent rect. 8 20
84 70.56 temperature 20 10 > th dose independent rect. 1 3
89 70.59 wind 3 43200 < th dose independent rect. 21 7
94 70.65 temperature 30 720 < th dose independent rect. 16 3
95 70.65 temperature 25 270 < th dose independent rect. 2 9
103 70.71 wind 1 90 < th dose independent rect. 23 5
105 70.74 humidity 50 14400 > th dose dependent rect. 5 1
114 70.78 humidity 80 720 < th dose dependent rect. 18 14
126 70.84 humidity 50 720 > th dose dependent rect. 16 3
127 70.84 humidity 50 720 > th dose dependent rect. 16 5
133 70.87 wind 9 43200 > th dose independent rect. 20 18
134 70.88 humidity 90 4320 > th dose dependent rect. 4 3
141 70.91 wind 1 90 < th dose independent rect. 17 11
151 70.93 wind 9 43200 < th dose independent rect. 21 17
166 70.97 radiation 20 1440 < th dose dependent rect. 11 1
187 71.01 wind 7 43200 > th dose dependent rect. 21 19
188 71.02 wind 9 43200 < th dose independent rect. 5 9
198 71.03 wind 7 43200 > th dose dependent rect. 15 22
204 71.05 wind 7 43200 > th dose dependent sin 4 NA
217 71.08 wind 9 43200 > th dose dependent rect. 10 4
220 71.09 temperature 20 270 > th dose independent rect. 6 21
228 71.11 wind 9 43200 < th dose independent sin 4 NA
229 71.11 wind 9 43200 > th dose independent rect. 6 8
241 71.13 wind 9 43200 > th dose independent rect. 1 13
243 71.14 radiation 20 1440 < th dose independent rect. 11 2
253 71.15 wind 9 43200 > th dose independent sin 4 NA
264 71.17 temperature 20 270 > th dose dependent rect. 8 3
270 71.18 wind 7 43200 > th dose dependent rect. 6 8
273 71.19 radiation 30 4320 < th dose independent rect. 7 1
295 71.21 wind 7 43200 < th dose independent rect. 15 22
296 71.21 wind 3 43200 > th dose dependent sin 11 NA
298 71.21 wind 9 43200 > th dose dependent rect. 9 9
300 71.21 wind 7 43200 > th dose dependent rect. 18 20
307 71.22 wind 3 43200 > th dose dependent rect. 22 18
314 71.24 wind 5 43200 < th dose dependent rect. 10 1
331 71.25 temperature 25 270 > th dose independent rect. 7 5
366 71.28 wind 1 43200 > th dose dependent rect. 9 2
380 71.30 wind 3 43200 > th dose independent rect. 20 16
383 71.30 wind 7 43200 > th dose independent rect. 15 22
386 71.31 temperature 25 270 > th dose independent rect. 8 3
397 71.31 wind 9 43200 > th dose dependent rect. 9 21
424 71.34 temperature 20 30 > th dose independent rect. 21 7
431 71.34 wind 9 43200 < th dose dependent rect. 9 2
437 71.34 wind 7 43200 > th dose dependent rect. 21 23
462 71.36 wind 3 43200 > th dose dependent rect. 18 20
465 71.37 radiation 30 4320 < th dose independent rect. 2 6
488 71.39 wind 9 43200 > th dose dependent rect. 9 17
496 71.40 radiation 30 4320 < th dose independent rect. 22 10
509 71.40 wind 9 43200 > th dose dependent rect. 9 15
528 71.42 wind 3 43200 > th dose independent rect. 22 1
540 71.42 wind 9 43200 > th dose dependent sin 21 NA
563 71.43 wind 9 43200 < th dose dependent rect. 21 17
564 71.43 wind 3 43200 > th dose dependent rect. 17 18
580 71.45 wind 3 43200 < th dose independent rect. 20 16
594 71.46 radiation 10 720 < th dose independent rect. 15 12
659 71.50 humidity 70 720 < th dose independent sin 13 NA
667 71.50 humidity 90 720 < th dose dependent sin 15 NA
681 71.51 wind 3 43200 < th dose independent rect. 22 1
684 71.51 radiation 30 4320 < th dose independent rect. 17 15
688 71.51 wind 3 43200 > th dose dependent sin 4 NA
699 71.52 wind 7 4320 > th dose independent rect. 18 1
743 71.55 wind 3 43200 > th dose independent rect. 10 1
751 71.55 wind 9 43200 < th dose dependent rect. 24 3
774 71.56 wind 3 30 < th dose dependent rect. 21 7
789 71.57 wind 9 43200 > th dose independent rect. 12 23
806 71.58 wind 3 43200 > th dose independent sin 9 NA
850 71.60 wind 9 43200 < th dose dependent sin 9 NA
860 71.60 humidity 60 30 > th dose dependent rect. 13 15
868 71.61 wind 9 43200 > th dose independent no NA NA
876 71.61 wind 9 43200 > th dose independent rect. 1 23
878 71.61 wind 9 43200 < th dose independent rect. 12 23
892 71.62 humidity 70 720 > th dose independent sin 12 NA
918 71.63 wind 9 43200 > th dose independent rect. 6 23
920 71.63 wind 7 43200 > th dose dependent no NA NA
941 71.64 humidity 60 14400 > th dose dependent rect. 2 5
952 71.65 wind 9 43200 < th dose independent no NA NA
956 71.65 wind 5 43200 < th dose independent rect. 17 15
978 71.65 wind 9 43200 > th dose dependent rect. 4 19
983 71.65 wind 9 43200 > th dose dependent rect. 1 22