BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0689900 Os03g0689900|Os03g0689900
         (458 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0689900  Tetratricopeptide region domain containing pro...   738   0.0  
AK111437                                                          360   2e-99

>Os03g0689900 Tetratricopeptide region domain containing protein
          Length = 458

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/444 (84%), Positives = 375/444 (84%)

Query: 15  DMWGQEYRTASGGCAAALDEHYAHTMSFGRGRGHXXXXXXXXXXXXXXXXXXXXXXXXXX 74
           DMWGQEYRTASGGCAAALDEHYAHTMSFGRGRGH                          
Sbjct: 15  DMWGQEYRTASGGCAAALDEHYAHTMSFGRGRGHAVLRAAAADPRCALASSLAAHHVAPR 74

Query: 75  XXXXXXXXXXXXXXXXXXXTEYERAVFRALSALIGEERDEQVAIERHFELLKEFPRDLMS 134
                              TEYERAVFRALSALIGEERDEQVAIERHFELLKEFPRDLMS
Sbjct: 75  DPARAAAFLAAAADNLGAATEYERAVFRALSALIGEERDEQVAIERHFELLKEFPRDLMS 134

Query: 135 LKRAQLICFYMGRPDTSLKFVEQVLPENQDQNYIYGMLAFPLLELGRMDDAEKAARKGLA 194
           LKRAQLICFYMGRPDTSLKFVEQVLPENQDQNYIYGMLAFPLLELGRMDDAEKAARKGLA
Sbjct: 135 LKRAQLICFYMGRPDTSLKFVEQVLPENQDQNYIYGMLAFPLLELGRMDDAEKAARKGLA 194

Query: 195 INKNDCWSQHNLCHVFQQECHFKEATEFMKSCSPSWAACSSFMLTHNWWHVAVCYLEGEF 254
           INKNDCWSQHNLCHVFQQECHFKEATEFMKSCSPSWAACSSFMLTHNWWHVAVCYLEGEF
Sbjct: 195 INKNDCWSQHNLCHVFQQECHFKEATEFMKSCSPSWAACSSFMLTHNWWHVAVCYLEGEF 254

Query: 255 PTSKVLEIYDHNFMTELEKSDCEAAEVYLNALGLLLRLHIRGQVXXXXXXXXXXXXXXTN 314
           PTSKVLEIYDHNFMTELEKSDCEAAEVYLNALGLLLRLHIRGQV              TN
Sbjct: 255 PTSKVLEIYDHNFMTELEKSDCEAAEVYLNALGLLLRLHIRGQVDLAKDRLAALLDALTN 314

Query: 315 EKIWHVEWXXXXXXXXXXSSMGEITRADNLLESLRSRVSSMDTKKQQVMQKAIQLAEAVY 374
           EKIWHVEW          SSMGEITRADNLLESLRSRVSSMDTKKQQVMQKAIQLAEAVY
Sbjct: 315 EKIWHVEWLLDLLVLWALSSMGEITRADNLLESLRSRVSSMDTKKQQVMQKAIQLAEAVY 374

Query: 375 EYGKGEHKKVFDILGPDFDALSCKELMQFGLYTAIEVLEKQIRKREGAPFLWRLLEKAYS 434
           EYGKGEHKKVFDILGPDFDALSCKELMQFGLYTAIEVLEKQIRKREGAPFLWRLLEKAYS
Sbjct: 375 EYGKGEHKKVFDILGPDFDALSCKELMQFGLYTAIEVLEKQIRKREGAPFLWRLLEKAYS 434

Query: 435 LHGRAADASVASEKANALQAAYSR 458
           LHGRAADASVASEKANALQAAYSR
Sbjct: 435 LHGRAADASVASEKANALQAAYSR 458



>AK111437 
          Length = 187

 Score =  360 bits (923), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 169/169 (100%), Positives = 169/169 (100%)

Query: 94  TEYERAVFRALSALIGEERDEQVAIERHFELLKEFPRDLMSLKRAQLICFYMGRPDTSLK 153
           TEYERAVFRALSALIGEERDEQVAIERHFELLKEFPRDLMSLKRAQLICFYMGRPDTSLK
Sbjct: 19  TEYERAVFRALSALIGEERDEQVAIERHFELLKEFPRDLMSLKRAQLICFYMGRPDTSLK 78

Query: 154 FVEQVLPENQDQNYIYGMLAFPLLELGRMDDAEKAARKGLAINKNDCWSQHNLCHVFQQE 213
           FVEQVLPENQDQNYIYGMLAFPLLELGRMDDAEKAARKGLAINKNDCWSQHNLCHVFQQE
Sbjct: 79  FVEQVLPENQDQNYIYGMLAFPLLELGRMDDAEKAARKGLAINKNDCWSQHNLCHVFQQE 138

Query: 214 CHFKEATEFMKSCSPSWAACSSFMLTHNWWHVAVCYLEGEFPTSKVLEI 262
           CHFKEATEFMKSCSPSWAACSSFMLTHNWWHVAVCYLEGEFPTSKVLEI
Sbjct: 139 CHFKEATEFMKSCSPSWAACSSFMLTHNWWHVAVCYLEGEFPTSKVLEI 187



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,994,072
Number of extensions: 430346
Number of successful extensions: 966
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 966
Number of HSP's successfully gapped: 3
Length of query: 458
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 354
Effective length of database: 11,605,545
Effective search space: 4108362930
Effective search space used: 4108362930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)