Os03g0689900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide region domain containing protein.
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Os03g0689900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.28 | 0.313 | 11.1 | -1.27 | 0.795 | 0.566 | -0.109 | -0.523 | -0.171 | 0.0012 | 20.5 | 234 | -- | -- |
| 45.33 | 0.314 | 11 | -1.17 | 0.804 | 0.61 | -0.000637 | -- | -0.153 | 0.0459 | 20.51 | 234 | -- | -- |
| 44.32 | 0.31 | 11.1 | -1.26 | 0.796 | 0.568 | -- | -0.499 | -0.169 | 0.00689 | 20.51 | 234 | -- | -- |
| 45.32 | 0.314 | 11 | -1.17 | 0.8 | 0.61 | -- | -- | -0.15 | 0.0438 | 20.52 | 234 | -- | -- |
| 70.98 | 0.392 | 11.1 | -1.54 | -- | 0.645 | -- | -1.18 | -0.282 | -- | 24.92 | 870 | -- | -- |
| 58.65 | 0.359 | 11 | -0.984 | 0.728 | -- | 0.00534 | -- | -0.0271 | 23.7 | -- | -- | -- | -- |
| 58.65 | 0.359 | 11 | -0.984 | 0.727 | -- | -- | -- | -0.0271 | 23.7 | -- | -- | -- | -- |
| 70.18 | 0.39 | 11.1 | -1.19 | -- | 0.722 | -- | -- | -0.281 | -- | 24.96 | 870 | -- | -- |
| 78.98 | 0.416 | 11 | -- | 0.791 | 0.341 | -- | -- | 0.0263 | 23.7 | 20.52 | 234 | -- | -- |
| 91.92 | 0.448 | 11 | -0.964 | -- | -- | -- | -- | -0.0185 | -- | -- | -- | -- | -- |
| 84.17 | 0.429 | 11 | -- | 0.716 | -- | -- | -- | 0.0825 | 23.6 | -- | -- | -- | -- |
| 105.2 | 0.478 | 11 | -- | -- | 0.507 | -- | -- | -0.0783 | -- | 25.09 | 869 | -- | -- |
| 116.41 | 0.504 | 11 | -- | -- | -- | -- | -- | 0.0884 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.31 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 2 | 44.33 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 3 | 44.38 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 7 | 44.40 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 11 | 44.45 | temperature | 25 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 23 | 44.53 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 35 | 44.62 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 23 |
| 45 | 44.74 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 60 | 44.93 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 66 | 45.02 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 14 |
| 67 | 45.05 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 18 |
| 70 | 45.07 | temperature | 15 | 270 | > th | dose dependent | sin | 10 | NA |
| 77 | 45.11 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 23 |
| 86 | 45.14 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 127 | 45.37 | temperature | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 184 | 45.59 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 206 | 45.70 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 23 |
| 219 | 45.76 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 223 | 45.77 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 23 |
| 233 | 45.82 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 264 | 45.94 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 291 | 46.04 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 299 | 46.07 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 352 | 46.27 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 23 |
| 375 | 46.34 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 13 |
| 517 | 46.83 | temperature | 20 | 10 | < th | dose independent | sin | 7 | NA |
| 527 | 46.85 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 18 |
| 640 | 47.10 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 22 |
| 725 | 47.25 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 736 | 47.27 | temperature | 20 | 30 | > th | dose independent | rect. | 17 | 21 |
| 764 | 47.30 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 765 | 47.30 | temperature | 20 | 30 | < th | dose independent | rect. | 5 | 23 |
| 790 | 47.34 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 23 |
| 813 | 47.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 8 |
| 924 | 47.57 | temperature | 20 | 10 | > th | dose independent | sin | 7 | NA |
| 978 | 47.65 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 23 |