BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0672400 Os03g0672400|AK061599
         (771 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0672400  Conserved hypothetical protein                     1037   0.0  

>Os03g0672400 Conserved hypothetical protein
          Length = 771

 Score = 1037 bits (2681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/771 (71%), Positives = 552/771 (71%)

Query: 1   MAAATXXXXXXXXXXXXXCAVRRXXXXXXXXXXXXXXXXRSSVVCRNASPRASWCAEKEN 60
           MAAAT             CAVRR                RSSVVCRNASPRASWCAEKEN
Sbjct: 1   MAAATARSPSPGPGARPGCAVRRSADSSPAASPCDLAALRSSVVCRNASPRASWCAEKEN 60

Query: 61  SGQRDXXXXXXXXXXXXXXXXXXXXNFMAPTISAASKASPRKKVLGERNEQQQLYPVASS 120
           SGQRD                    NFMAPTISAASKASPRKKVLGERNEQQQLYPVASS
Sbjct: 61  SGQRDAAARAAAAPKPARPAAGAAKNFMAPTISAASKASPRKKVLGERNEQQQLYPVASS 120

Query: 121 PVKPMASEAGAPRRLRLSFDGXXXXXXXXXXXXXXXXXGSRHSFGGEEERRVENPPCKNX 180
           PVKPMASEAGAPRRLRLSFDG                 GSRHSFGGEEERRVENPPCKN 
Sbjct: 121 PVKPMASEAGAPRRLRLSFDGAPNTAPPAASTPVTAAAGSRHSFGGEEERRVENPPCKNH 180

Query: 181 XXXXXXXXXXXXXXXXXXXPYDPRTNYLSPRPRFLHYKPNPRIDLYRQGSSGGVRRLEDG 240
                              PYDPRTNYLSPRPRFLHYKPNPRIDLYRQGSSGGVRRLEDG
Sbjct: 181 HHATAFDDAASAEADQGAAPYDPRTNYLSPRPRFLHYKPNPRIDLYRQGSSGGVRRLEDG 240

Query: 241 FAXXXXXXXXXXXXXXXXXXXXXLVDEEQQAHLSSEXXXXXXXXXXXXXXXXLEPASGSP 300
           FA                     LVDEEQQAHLSSE                LEPASGSP
Sbjct: 241 FASESSEETVTTTTTTSSEEEVVLVDEEQQAHLSSELGDGAAVPAADACALPLEPASGSP 300

Query: 301 RARVLTPEPATRSPRARVQTPEPEPTAXXXXXXXXXXXXXXXFLVAPLALVVFMAAALIC 360
           RARVLTPEPATRSPRARVQTPEPEPTA               FLVAPLALVVFMAAALIC
Sbjct: 301 RARVLTPEPATRSPRARVQTPEPEPTASSERARRPRKRSSLRFLVAPLALVVFMAAALIC 360

Query: 361 XXXXXXXXXXXXLTALSKVSDFLSVQELHPVELAAWLKQWSSSSLNLVTSYWESLVWAQE 420
                       LTALSKVSDFLSVQELHPVELAAWLKQWSSSSLNLVTSYWESLVWAQE
Sbjct: 361 VPPPPVDSPVMPLTALSKVSDFLSVQELHPVELAAWLKQWSSSSLNLVTSYWESLVWAQE 420

Query: 421 QEFFGPHFXXXXXXXXXXXHEGVDLYCNFVETRPVLMEDIGASAFEQDSKIQEAVSASDS 480
           QEFFGPHF           HEGVDLYCNFVETRPVLMEDIGASAFEQDSKIQEAVSASDS
Sbjct: 421 QEFFGPHFAANLSAATASAHEGVDLYCNFVETRPVLMEDIGASAFEQDSKIQEAVSASDS 480

Query: 481 ELISEISDVEQEDITDKGDVIDDGFLAEELNVEMPEEDAEMSQEVSGSNGEEMASFSQDL 540
           ELISEISDVEQEDITDKGDVIDDGFLAEELNVEMPEEDAEMSQEVSGSNGEEMASFSQDL
Sbjct: 481 ELISEISDVEQEDITDKGDVIDDGFLAEELNVEMPEEDAEMSQEVSGSNGEEMASFSQDL 540

Query: 541 EPSQPAGEAEPLENIETSTSSLKQDVQTDDSEGDRAADGEESPEADHGMKSELGMWPSYL 600
           EPSQPAGEAEPLENIETSTSSLKQDVQTDDSEGDRAADGEESPEADHGMKSELGMWPSYL
Sbjct: 541 EPSQPAGEAEPLENIETSTSSLKQDVQTDDSEGDRAADGEESPEADHGMKSELGMWPSYL 600

Query: 601 DKISKXXXXXXXXXXXXXXXXXXFLLMSKKXXXXXXXXXXXXXXXXXXXXXXKTLSGSGS 660
           DKISK                  FLLMSKK                      KTLSGSGS
Sbjct: 601 DKISKPAAAGAALAAVIVPAALAFLLMSKKQDQAVANAAAEAPADQAEPVVEKTLSGSGS 660

Query: 661 SEGHLRVKGSQLQTPPVADETERFXXXXXXXXXXXXXXXXXXRRKSAKEDESLSLDPVSR 720
           SEGHLRVKGSQLQTPPVADETERF                  RRKSAKEDESLSLDPVSR
Sbjct: 661 SEGHLRVKGSQLQTPPVADETERFGGGSGASMYSSSLSSGYGRRKSAKEDESLSLDPVSR 720

Query: 721 RDSAAQPTSSYGSFTTYEKIPAKKRNKDDEAVTTPVRRSSRLRNQVKSPEA 771
           RDSAAQPTSSYGSFTTYEKIPAKKRNKDDEAVTTPVRRSSRLRNQVKSPEA
Sbjct: 721 RDSAAQPTSSYGSFTTYEKIPAKKRNKDDEAVTTPVRRSSRLRNQVKSPEA 771



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.126    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,189,276
Number of extensions: 724599
Number of successful extensions: 2616
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2607
Number of HSP's successfully gapped: 1
Length of query: 771
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 662
Effective length of database: 11,344,475
Effective search space: 7510042450
Effective search space used: 7510042450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 160 (66.2 bits)