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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0672400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0429) R2 : 0.0494
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.44 (0.0903) R2dN8 : 0.0638 R2N8 : 0.0494
σ : 0.808
deviance : 299.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
278.76 0.784 1.69 -3.62 0.164 -296 0.437 -631 0.422 10.4 15 90 -- --
281.61 0.788 3.25 -0.407 0.184 2.24 0.288 -- 0.408 10.4 15 90 -- --
279.52 0.779 1.7 -3.59 0.16 -296 -- -631 0.419 10.2 15.01 86 -- --
279.49 0.779 3.25 -0.338 0.164 2.33 -- -- 0.422 10.4 15.22 164 -- --
281.14 0.781 1.7 -3.61 -- -296 -- -631 0.424 -- 15.01 88 -- --
291 0.8 3.25 -0.502 0.15 -- 0.546 -- 0.385 10.4 -- -- -- --
292.21 0.801 3.25 -0.481 0.148 -- -- -- 0.387 10.1 -- -- -- --
281.13 0.781 3.25 -0.34 -- 2.25 -- -- 0.423 -- 15.33 175 -- --
282.37 0.783 3.24 -- 0.166 2.5 -- -- 0.463 10.5 15.36 128 -- --
293.53 0.801 3.26 -0.483 -- -- -- -- 0.386 -- -- -- -- --
298.3 0.808 3.24 -- 0.15 -- -- -- 0.44 10.4 -- -- -- --
284.04 0.785 3.24 -- -- 2.42 -- -- 0.463 -- 15.44 180 -- --
299.68 0.808 3.25 -- -- -- -- -- 0.44 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 265.90 temperature 15.0 720 > th dose independent rect. 5 16
2 267.29 temperature 15.0 720 > th dose independent rect. 9 8
3 270.47 temperature 15.0 30 > th dose independent rect. 9 23
4 270.57 temperature 25.0 4320 > th dose dependent rect. 9 1
5 270.74 temperature 25.0 4320 < th dose independent rect. 8 1
6 270.89 humidity 80.0 43200 > th dose independent rect. 3 14
8 271.28 temperature 25.0 4320 > th dose independent rect. 8 1
10 271.52 humidity 80.0 43200 < th dose independent rect. 3 14
12 271.57 temperature 15.0 14400 < th dose independent rect. 10 17
13 271.58 temperature 15.0 14400 < th dose independent rect. 11 15
15 271.59 humidity 80.0 43200 > th dose dependent rect. 24 18
19 271.68 temperature 15.0 14400 < th dose independent rect. 17 8
22 271.72 temperature 15.0 14400 < th dose independent rect. 6 21
24 271.73 temperature 15.0 14400 > th dose independent rect. 10 16
26 271.74 temperature 15.0 720 > th dose independent rect. 17 16
29 271.76 humidity 90.0 43200 < th dose independent rect. 12 17
43 271.84 temperature 15.0 14400 < th dose independent rect. 24 1
58 271.92 temperature 15.0 14400 < th dose independent sin 18 NA
64 271.93 humidity 70.0 43200 > th dose dependent rect. 3 13
74 272.07 humidity 80.0 43200 > th dose dependent rect. 9 21
90 272.12 temperature 15.0 14400 > th dose independent sin 19 NA
147 272.32 humidity 80.0 43200 > th dose dependent no NA NA
149 272.33 humidity 80.0 43200 > th dose dependent rect. 13 23
154 272.36 humidity 80.0 43200 > th dose dependent rect. 11 16
173 272.44 temperature 15.0 14400 > th dose independent rect. 16 9
186 272.50 humidity 80.0 43200 > th dose dependent rect. 2 23
193 272.53 temperature 15.0 14400 > th dose independent rect. 19 4
244 272.70 humidity 90.0 43200 < th dose independent sin 14 NA
248 272.72 precipitation 0.1 720 < th dose independent rect. 5 16
249 272.72 precipitation 0.1 720 < th dose dependent rect. 5 16
269 272.78 humidity 90.0 43200 > th dose independent rect. 12 17
271 272.79 temperature 15.0 14400 > th dose independent rect. 9 12
283 272.82 humidity 90.0 43200 > th dose independent rect. 13 14
288 272.83 temperature 15.0 14400 < th dose independent sin 23 NA
298 272.85 humidity 80.0 43200 > th dose dependent sin 16 NA
301 272.86 humidity 80.0 43200 > th dose dependent sin 4 NA
312 272.90 temperature 15.0 14400 < th dose independent rect. 5 15
332 272.97 temperature 15.0 14400 < th dose independent rect. 20 2
365 273.08 humidity 80.0 43200 > th dose independent sin 2 NA
372 273.09 temperature 25.0 4320 > th dose dependent rect. 3 7
421 273.23 temperature 30.0 10 < th dose independent rect. 9 23
424 273.24 humidity 90.0 43200 > th dose independent sin 15 NA
425 273.24 temperature 30.0 14400 > th dose independent rect. 16 1
444 273.28 temperature 30.0 14400 < th dose independent rect. 16 1
454 273.30 humidity 70.0 43200 > th dose dependent sin 2 NA
525 273.54 temperature 15.0 14400 > th dose independent rect. 24 1
588 273.70 temperature 30.0 14400 > th dose independent rect. 12 6
624 273.78 humidity 90.0 43200 < th dose independent rect. 23 20
627 273.79 temperature 30.0 14400 < th dose independent rect. 11 7
643 273.80 temperature 30.0 14400 > th dose independent rect. 14 4
656 273.83 temperature 30.0 14400 > th dose independent sin 14 NA
670 273.85 temperature 30.0 14400 < th dose independent rect. 11 11
673 273.85 humidity 90.0 43200 < th dose independent rect. 23 16
674 273.85 temperature 30.0 14400 < th dose independent rect. 11 18
694 273.88 temperature 30.0 14400 > th dose independent rect. 12 3
705 273.89 humidity 90.0 43200 < th dose independent rect. 21 1
736 273.90 temperature 30.0 14400 > th dose independent rect. 12 1
737 273.90 temperature 15.0 30 > th dose independent rect. 13 15
740 273.90 humidity 90.0 43200 < th dose independent rect. 21 22
764 273.92 humidity 90.0 43200 < th dose independent rect. 21 18
771 273.94 temperature 30.0 14400 < th dose independent sin 14 NA
780 273.96 temperature 30.0 14400 < th dose independent rect. 12 1
787 273.97 humidity 80.0 43200 > th dose dependent rect. 14 1
790 273.98 humidity 90.0 43200 < th dose independent rect. 21 14
822 274.01 temperature 30.0 14400 < th dose independent rect. 11 4
828 274.02 temperature 30.0 14400 < th dose independent rect. 16 8
829 274.02 humidity 90.0 720 < th dose independent rect. 9 8
837 274.03 temperature 30.0 14400 < th dose independent rect. 16 6
855 274.04 temperature 30.0 14400 < th dose independent rect. 16 13
862 274.04 humidity 90.0 43200 < th dose independent rect. 23 23
916 274.08 humidity 90.0 43200 < th dose independent rect. 17 22
993 274.17 temperature 15.0 14400 < th dose independent rect. 24 23