BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0670200 Os03g0670200|AK069553
(444 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0670200 Similar to YJR013Wp (Fragment) 796 0.0
>Os03g0670200 Similar to YJR013Wp (Fragment)
Length = 444
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/444 (90%), Positives = 400/444 (90%)
Query: 1 MASAAVTLPXXXXXXXXXXXXXXXLGEWQDAHLEVRYTDVDYLXXXXXXXXXXXXXXXXX 60
MASAAVTLP LGEWQDAHLEVRYTDVDYL
Sbjct: 1 MASAAVTLPRVMLAAAAVRAAMLALGEWQDAHLEVRYTDVDYLVFSDAAASVAAGGSPFA 60
Query: 61 RATYRYSPLLAYLLVPNSLLHPTWGKLLFSAADLLVGLFIDTILKLRGVPDSTRIWSVVA 120
RATYRYSPLLAYLLVPNSLLHPTWGKLLFSAADLLVGLFIDTILKLRGVPDSTRIWSVVA
Sbjct: 61 RATYRYSPLLAYLLVPNSLLHPTWGKLLFSAADLLVGLFIDTILKLRGVPDSTRIWSVVA 120
Query: 121 WLFNPFTFTIGTRGNCEPIVCAVILWILICLMNGRVLQASFWYGLIVHFRIYPIIYAIPF 180
WLFNPFTFTIGTRGNCEPIVCAVILWILICLMNGRVLQASFWYGLIVHFRIYPIIYAIPF
Sbjct: 121 WLFNPFTFTIGTRGNCEPIVCAVILWILICLMNGRVLQASFWYGLIVHFRIYPIIYAIPF 180
Query: 181 VIVLGKNYAGPAGRPILTQWTSKQHLQSDKSSPSVERATSLLTNLWNFLTSLITRNTIXX 240
VIVLGKNYAGPAGRPILTQWTSKQHLQSDKSSPSVERATSLLTNLWNFLTSLITRNTI
Sbjct: 181 VIVLGKNYAGPAGRPILTQWTSKQHLQSDKSSPSVERATSLLTNLWNFLTSLITRNTILF 240
Query: 241 XXXXXXXXXXWTGVFFYLYGWEFLNEALLYHLSRTDPRHNFSIYFYHIYLHHQQGFSSIQ 300
WTGVFFYLYGWEFLNEALLYHLSRTDPRHNFSIYFYHIYLHHQQGFSSIQ
Sbjct: 241 GLLSGSMFFLWTGVFFYLYGWEFLNEALLYHLSRTDPRHNFSIYFYHIYLHHQQGFSSIQ 300
Query: 301 KLASFLPQLIVQLALILRFSRDLPFCLFLQTVAFVAFNKVMTAQYFVWFFCLLPLILPWT 360
KLASFLPQLIVQLALILRFSRDLPFCLFLQTVAFVAFNKVMTAQYFVWFFCLLPLILPWT
Sbjct: 301 KLASFLPQLIVQLALILRFSRDLPFCLFLQTVAFVAFNKVMTAQYFVWFFCLLPLILPWT 360
Query: 361 TMKLKWKGLACILVWMGSQLHWLMWAYMLEFKGQNVFIPLWAAGLMFLAANIFVMLMVIN 420
TMKLKWKGLACILVWMGSQLHWLMWAYMLEFKGQNVFIPLWAAGLMFLAANIFVMLMVIN
Sbjct: 361 TMKLKWKGLACILVWMGSQLHWLMWAYMLEFKGQNVFIPLWAAGLMFLAANIFVMLMVIN 420
Query: 421 HHKFTPLFSSSTVKSASKIAAKKE 444
HHKFTPLFSSSTVKSASKIAAKKE
Sbjct: 421 HHKFTPLFSSSTVKSASKIAAKKE 444
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.141 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,846,933
Number of extensions: 484962
Number of successful extensions: 1173
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1169
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 340
Effective length of database: 11,605,545
Effective search space: 3945885300
Effective search space used: 3945885300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 158 (65.5 bits)