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Os03g0670200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to YJR013Wp (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.1 (0.011) R2 : 0.669
β1 : 1.12 (0.0403) R2dD : 0.58 R2D : 0.375
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.408 (0.0235) R2dN8 : 0.293 R2N8 : 0.089
σ : 0.206
deviance : 19.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.93 0.193 9.07 1.1 0.127 -0.0333 -0.207 1.07 0.414 9.12 0.437 7759 -- --
17.05 0.192 9.09 1.03 0.124 0.242 -0.219 -- 0.421 9.04 0.5054 15994 -- --
17.07 0.192 9.07 1.11 0.127 -0.0442 -- 1.08 0.412 9.49 0.4609 7756 -- --
17.18 0.193 9.09 1.02 0.129 0.248 -- -- 0.429 9.42 0.5 15980 -- --
18.02 0.198 9.07 1.1 -- -0.0432 -- 1.08 0.415 -- 0.4629 7765 -- --
18.44 0.201 9.1 1.12 0.126 -- -0.216 -- 0.407 9.03 -- -- -- --
18.59 0.202 9.1 1.12 0.126 -- -- -- 0.407 9.42 -- -- -- --
18.14 0.198 9.09 1.02 -- 0.246 -- -- 0.43 -- 0.4992 15994 -- --
32.4 0.265 9.09 -- 0.103 0.603 -- -- 0.412 9.03 0.9855 38815 -- --
19.52 0.206 9.1 1.12 -- -- -- -- 0.408 -- -- -- -- --
51.51 0.336 9.12 -- 0.127 -- -- -- 0.283 8.75 -- -- -- --
33.05 0.268 9.1 -- -- 0.575 -- -- 0.427 -- 1.4 47520 -- --
52.43 0.338 9.13 -- -- -- -- -- 0.284 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.71 radiation 30.0 270 < th dose dependent rect. 15 12
3 16.77 radiation 20.0 270 < th dose independent rect. 15 12
4 16.78 temperature 10.0 10 > th dose dependent rect. 14 10
5 16.81 temperature 10.0 270 > th dose dependent rect. 12 11
10 16.83 radiation 10.0 90 > th dose dependent rect. 11 1
13 16.85 wind 1.0 10 > th dose independent rect. 14 19
17 16.87 radiation 1.0 90 > th dose dependent rect. 9 3
23 16.89 wind 1.0 43200 > th dose independent rect. 8 1
24 16.89 humidity 50.0 270 > th dose independent rect. 16 11
25 16.89 wind 1.0 43200 < th dose dependent rect. 8 1
28 16.89 precipitation 0.1 4320 > th dose dependent rect. 22 20
29 16.90 wind 1.0 43200 < th dose independent rect. 8 1
30 16.90 wind 9.0 270 < th dose independent rect. 12 11
36 16.91 radiation 30.0 10 > th dose independent rect. 11 1
38 16.91 radiation 1.0 90 > th dose independent rect. 14 19
43 16.93 radiation 10.0 10 > th dose dependent rect. 11 1
47 16.94 wind 1.0 43200 < th dose dependent rect. 24 9
50 16.95 wind 1.0 43200 < th dose independent rect. 24 3
52 16.95 temperature 15.0 270 > th dose independent rect. 23 13
53 16.95 precipitation 0.1 270 < th dose independent rect. 23 13
58 16.95 precipitation 0.1 270 < th dose dependent rect. 23 13
64 16.97 wind 1.0 43200 > th dose independent rect. 5 4
65 16.97 wind 1.0 43200 < th dose independent rect. 5 4
67 16.97 temperature 10.0 270 > th dose independent rect. 12 11
70 16.97 atmosphere 995.0 270 > th dose independent rect. 23 13
74 16.97 wind 1.0 43200 < th dose dependent rect. 24 3
76 16.97 wind 1.0 43200 < th dose dependent rect. 23 5
80 16.98 precipitation 0.1 270 < th dose independent rect. 12 11
81 16.98 precipitation 0.1 4320 > th dose independent rect. 23 19
82 16.98 precipitation 0.1 4320 < th dose independent rect. 23 19
86 16.98 wind 1.0 43200 < th dose dependent rect. 21 9
89 16.98 precipitation 0.1 270 < th dose dependent rect. 12 11
92 16.98 precipitation 0.1 4320 < th dose dependent rect. 23 19
94 16.99 wind 1.0 43200 > th dose independent rect. 24 2
98 16.99 humidity 80.0 43200 < th dose independent rect. 2 7
100 16.99 wind 9.0 270 < th dose independent rect. 23 13
101 16.99 wind 1.0 43200 < th dose dependent sin 8 NA
104 16.99 wind 1.0 43200 < th dose dependent rect. 21 12
105 16.99 temperature 10.0 270 > th dose dependent rect. 24 12
111 17.00 humidity 80.0 43200 > th dose independent rect. 4 4
123 17.00 wind 1.0 43200 < th dose dependent rect. 17 13
130 17.01 atmosphere 1015.0 270 < th dose independent rect. 12 11
142 17.01 wind 1.0 43200 < th dose dependent rect. 17 17
146 17.02 wind 1.0 43200 < th dose independent rect. 23 10
150 17.02 temperature 30.0 270 < th dose dependent rect. 3 5
157 17.02 wind 1.0 43200 < th dose dependent rect. 19 14
168 17.03 wind 1.0 43200 < th dose independent rect. 24 13
200 17.04 wind 9.0 270 < th dose independent rect. 3 13
203 17.04 wind 1.0 10 > th dose independent rect. 12 21
222 17.05 humidity 80.0 43200 > th dose independent rect. 24 9
233 17.05 wind 1.0 43200 < th dose dependent rect. 5 4
244 17.05 wind 1.0 43200 < th dose dependent rect. 24 19
251 17.06 wind 1.0 43200 > th dose independent rect. 24 9
258 17.06 humidity 80.0 30 < th dose independent rect. 12 21
260 17.06 wind 1.0 43200 < th dose dependent rect. 7 3
277 17.06 wind 1.0 43200 < th dose dependent rect. 24 22
278 17.07 wind 1.0 43200 < th dose independent sin 7 NA
291 17.07 humidity 80.0 30 < th dose independent rect. 14 19
297 17.07 radiation 10.0 43200 < th dose dependent rect. 20 8
314 17.08 wind 1.0 43200 > th dose independent rect. 24 13
317 17.08 wind 7.0 270 < th dose independent rect. 12 20
337 17.09 wind 1.0 270 > th dose independent rect. 12 11
394 17.10 precipitation 0.1 14400 > th dose independent rect. 7 11
404 17.10 wind 1.0 14400 > th dose dependent rect. 8 1
424 17.11 precipitation 0.1 14400 < th dose independent rect. 7 11
434 17.11 wind 7.0 14400 < th dose dependent rect. 8 1
449 17.11 precipitation 0.1 14400 < th dose dependent rect. 7 11
472 17.11 wind 1.0 43200 < th dose dependent rect. 8 22
476 17.12 humidity 80.0 43200 < th dose independent rect. 5 2
483 17.12 temperature 10.0 270 > th dose independent rect. 16 11
485 17.12 radiation 40.0 270 < th dose independent rect. 16 11
487 17.12 temperature 10.0 270 > th dose independent rect. 3 13
490 17.12 atmosphere 1015.0 270 < th dose independent rect. 3 13
491 17.12 wind 1.0 43200 < th dose independent rect. 19 15
493 17.12 wind 1.0 43200 < th dose independent rect. 16 18
495 17.12 precipitation 0.1 14400 > th dose dependent sin 0 NA
523 17.12 wind 1.0 43200 < th dose dependent rect. 21 23
533 17.13 precipitation 0.1 270 < th dose independent rect. 3 13
542 17.13 wind 7.0 90 < th dose independent rect. 14 19
553 17.13 precipitation 0.1 270 < th dose dependent rect. 3 13
554 17.13 precipitation 0.1 14400 > th dose dependent rect. 6 14
578 17.14 precipitation 0.1 14400 > th dose independent rect. 4 14
579 17.14 precipitation 0.1 14400 < th dose independent rect. 4 14
593 17.14 wind 1.0 10 > th dose independent rect. 12 23
606 17.14 precipitation 0.1 14400 < th dose dependent rect. 4 14
619 17.14 wind 1.0 43200 < th dose dependent rect. 11 22
624 17.14 wind 1.0 43200 < th dose dependent rect. 3 23
629 17.15 wind 1.0 43200 > th dose independent sin 5 NA
660 17.15 wind 1.0 43200 < th dose dependent no NA NA
661 17.15 humidity 90.0 43200 < th dose dependent rect. 5 1
663 17.15 precipitation 0.1 43200 > th dose dependent rect. 17 3
682 17.15 precipitation 0.1 4320 > th dose dependent rect. 14 15
690 17.15 humidity 90.0 10 < th dose dependent rect. 14 19
708 17.16 precipitation 0.1 14400 > th dose independent sin 23 NA
713 17.16 temperature 30.0 270 < th dose independent rect. 16 11
726 17.16 wind 1.0 43200 > th dose independent rect. 24 17
738 17.16 temperature 30.0 90 < th dose dependent rect. 5 5
756 17.16 wind 1.0 43200 < th dose dependent rect. 11 19
768 17.17 precipitation 0.1 14400 < th dose independent sin 22 NA
772 17.17 wind 1.0 43200 < th dose independent rect. 23 5
775 17.17 precipitation 0.1 14400 < th dose independent rect. 12 6
777 17.17 precipitation 0.1 14400 > th dose independent rect. 11 7
806 17.17 precipitation 0.1 14400 < th dose dependent sin 22 NA
822 17.17 precipitation 0.1 14400 < th dose dependent rect. 12 6
829 17.17 precipitation 0.1 14400 > th dose dependent rect. 12 8
880 17.17 wind 1.0 43200 < th dose dependent rect. 5 23
913 17.18 precipitation 0.1 14400 > th dose independent rect. 4 17
922 17.18 wind 1.0 43200 > th dose independent rect. 24 20
938 17.18 temperature 10.0 10 > th dose dependent rect. 24 14
963 17.19 precipitation 0.1 14400 > th dose independent rect. 16 3
965 17.19 humidity 90.0 270 < th dose independent rect. 8 4