BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0669100 Os03g0669100|AK063633
         (180 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0669100  Similar to Deoxyuridine 5\'-triphosphate nucle...   290   4e-79

>Os03g0669100 Similar to Deoxyuridine 5\'-triphosphate nucleotidohydrolase (EC
           3.6.1.23) (dUTPase) (dUTP pyrophosphatase) (P18)
          Length = 180

 Score =  290 bits (742), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 147/161 (91%), Positives = 147/161 (91%)

Query: 20  VQEPPHXXXXXXXXXXXXXXSENAVLPSRGSALAAGYDLSSAAEVVVPARGKAMVPTDLS 79
           VQEPPH              SENAVLPSRGSALAAGYDLSSAAEVVVPARGKAMVPTDLS
Sbjct: 20  VQEPPHKIAKVAPLLKVKKLSENAVLPSRGSALAAGYDLSSAAEVVVPARGKAMVPTDLS 79

Query: 80  IAIPEGTYARVAPRSGLALKHSIDVGAGVIDADYRGPVGVILFNHSDTDFAVKPGDRIAQ 139
           IAIPEGTYARVAPRSGLALKHSIDVGAGVIDADYRGPVGVILFNHSDTDFAVKPGDRIAQ
Sbjct: 80  IAIPEGTYARVAPRSGLALKHSIDVGAGVIDADYRGPVGVILFNHSDTDFAVKPGDRIAQ 139

Query: 140 MIIEVIVTPEVAEVEDLDATVVSSRKLGEFIWSVMDGWVMS 180
           MIIEVIVTPEVAEVEDLDATVVSSRKLGEFIWSVMDGWVMS
Sbjct: 140 MIIEVIVTPEVAEVEDLDATVVSSRKLGEFIWSVMDGWVMS 180



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,196,127
Number of extensions: 202699
Number of successful extensions: 440
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 86
Effective length of database: 12,127,685
Effective search space: 1042980910
Effective search space used: 1042980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)