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Os03g0669100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) (dUTPase) (dUTP pyrophosphatase) (P18).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.96 (0.0254) R2 : 0.848
β1 : 1.23 (0.0941) R2dD : 0.0607 R2D : 0.0245
β2 : 2.39 (0.0623) R2dC : 0.511 R2C : 0.623
β3 : -1.41 (0.0591) R2dE : 0.203 R2E : 0.278
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.204 (0.0545) R2dN8 : 0.00636 R2N8 : -0.0111
σ : 0.473
deviance : 103.23
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_____
C
peak time of C : 22.1
E
wheather : temperature
threshold : 19.58
memory length : 267
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.4
open length of G : 16.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
102.78 0.476 9.96 1.22 2.43 -1.41 0.362 -0.237 0.199 22 19.5 268 18.1 16.8
102.8 0.472 9.96 1.24 2.41 -1.41 0.364 -- 0.208 22 19.6 271 18.2 16.7
103.04 0.473 9.96 1.2 2.41 -1.42 -- -0.257 0.199 22.1 19.6 269 18.3 16.5
103.23 0.473 9.96 1.23 2.39 -1.41 -- -- 0.204 22.1 19.58 267 18.4 16.4
166.78 0.601 10 1.27 -- -2.28 -- -0.608 -0.115 -- 18.7 356 23.3 12.7
165.61 0.603 10 0.889 2.96 -- 0.236 -- 0.0523 20.6 -- -- -- --
165.79 0.603 10 0.882 2.96 -- -- -- 0.0523 20.6 -- -- -- --
144.47 0.56 9.88 1.33 -- -2.45 -- -- 0.176 -- 18.95 306 23.4 12.4
137.78 0.547 9.98 -- 2.4 -1.13 -- -- 0.0459 21.6 20.3 209 18.7 16.8
659.91 1.2 9.93 0.872 -- -- -- -- 0.0258 -- -- -- -- --
186.29 0.638 10 -- 2.96 -- -- -- -0.0459 20.6 -- -- -- --
184.51 0.633 9.97 -- -- -2.5 -- -- -0.0916 -- 1.878 358 23.5 11.9
679.99 1.22 9.95 -- -- -- -- -- -0.071 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 105.53 temperature 20.0 270 > th dose independent rect. 18 17
16 111.68 temperature 30.0 270 < th dose dependent rect. 22 9
21 112.56 temperature 15.0 90 > th dose dependent rect. 20 16
22 113.27 temperature 20.0 270 > th dose independent rect. 6 5
26 113.69 temperature 15.0 10 > th dose dependent rect. 20 16
28 113.75 temperature 20.0 270 > th dose independent rect. 7 3
51 116.39 temperature 20.0 270 > th dose independent rect. 8 1
78 118.14 temperature 20.0 90 > th dose dependent rect. 12 8
90 118.98 temperature 20.0 10 > th dose independent rect. 8 4
103 119.40 temperature 10.0 10 > th dose dependent rect. 8 4
106 119.55 temperature 10.0 90 > th dose dependent rect. 8 4
121 120.03 wind 7.0 90 < th dose independent rect. 12 20
134 120.67 precipitation 0.1 270 < th dose independent rect. 10 21
135 120.67 precipitation 0.1 270 < th dose dependent rect. 10 21
139 120.83 wind 7.0 270 < th dose independent rect. 10 21
148 120.97 precipitation 0.1 270 < th dose independent rect. 9 23
149 120.97 precipitation 0.1 270 < th dose dependent rect. 9 23
153 121.20 temperature 15.0 10 > th dose dependent rect. 24 12
154 121.33 temperature 10.0 270 > th dose dependent rect. 8 1
161 121.73 precipitation 0.1 90 < th dose independent rect. 12 20
162 121.73 precipitation 0.1 90 < th dose dependent rect. 12 20
175 122.01 wind 9.0 270 < th dose independent rect. 9 23
189 122.31 temperature 20.0 270 > th dose independent rect. 5 21
220 122.94 temperature 25.0 90 > th dose independent rect. 12 8
222 123.05 wind 1.0 10 > th dose independent rect. 8 4
227 123.14 radiation 1.0 90 > th dose independent rect. 12 19
241 123.54 humidity 90.0 90 < th dose independent rect. 8 4
257 123.73 wind 9.0 10 < th dose independent rect. 8 4
259 123.75 wind 9.0 90 < th dose independent rect. 8 4
271 123.91 precipitation 0.1 90 < th dose independent rect. 8 4
272 123.91 precipitation 0.1 90 < th dose dependent rect. 8 4
275 123.92 atmosphere 995.0 30 > th dose independent rect. 8 4
276 123.92 atmosphere 1015.0 30 < th dose independent rect. 8 4
278 123.92 temperature 10.0 30 > th dose independent rect. 12 20
296 124.01 radiation 1.0 270 > th dose independent rect. 8 1
297 124.04 temperature 10.0 1440 > th dose independent rect. 9 4
300 124.04 atmosphere 995.0 1440 > th dose independent rect. 9 4
301 124.04 temperature 10.0 1440 > th dose independent rect. 13 20
304 124.07 radiation 1.0 90 > th dose independent rect. 8 4
308 124.10 temperature 25.0 30 > th dose dependent rect. 12 19
330 124.34 temperature 10.0 270 > th dose independent rect. 10 21
341 124.45 humidity 50.0 270 > th dose independent rect. 7 3
342 124.46 wind 7.0 270 < th dose independent rect. 8 1
359 124.82 precipitation 0.1 270 < th dose independent rect. 8 1
360 124.82 precipitation 0.1 270 < th dose dependent rect. 8 1
365 124.86 temperature 10.0 270 > th dose independent rect. 8 1
367 124.86 humidity 50.0 270 > th dose independent rect. 8 1
368 124.86 atmosphere 995.0 270 > th dose independent rect. 8 1
369 124.86 atmosphere 1015.0 270 < th dose independent rect. 8 1
370 124.86 temperature 10.0 270 > th dose independent rect. 9 23
375 124.93 radiation 40.0 270 < th dose independent rect. 7 3
395 125.23 humidity 90.0 30 < th dose dependent rect. 12 20
399 125.28 wind 1.0 270 > th dose independent rect. 11 19
414 125.42 temperature 20.0 270 > th dose dependent rect. 12 4
417 125.48 radiation 40.0 270 < th dose independent rect. 8 1
446 125.86 wind 1.0 30 > th dose independent rect. 12 20
458 126.03 radiation 40.0 270 < th dose dependent rect. 15 11
485 126.27 radiation 20.0 270 < th dose independent rect. 15 11
514 126.54 radiation 1.0 270 > th dose independent rect. 6 5
526 126.70 temperature 30.0 270 < th dose independent rect. 7 3
534 126.80 temperature 30.0 270 < th dose independent rect. 8 1
542 126.84 atmosphere 1015.0 10 < th dose dependent rect. 8 4
579 127.06 radiation 40.0 270 < th dose dependent rect. 7 18
595 127.16 radiation 40.0 270 < th dose dependent rect. 6 20
607 127.26 temperature 30.0 270 < th dose independent rect. 7 15
633 127.45 temperature 20.0 270 < th dose independent rect. 23 11
635 127.45 temperature 30.0 270 < th dose independent rect. 6 19
647 127.50 wind 9.0 270 < th dose dependent rect. 8 1
648 127.50 temperature 30.0 90 < th dose dependent rect. 3 6
665 127.61 humidity 80.0 90 < th dose independent rect. 12 20
670 127.66 temperature 30.0 270 < th dose independent rect. 6 6
691 127.82 wind 7.0 90 < th dose independent rect. 12 7
692 127.84 radiation 40.0 270 < th dose independent rect. 7 18
699 127.87 radiation 40.0 270 < th dose independent rect. 6 21
702 127.88 wind 9.0 270 < th dose dependent rect. 7 3
724 128.06 radiation 1.0 270 > th dose independent rect. 11 8
747 128.22 temperature 20.0 270 < th dose independent sin 7 NA
771 128.41 temperature 20.0 270 > th dose independent sin 7 NA
773 128.43 atmosphere 1015.0 270 < th dose dependent rect. 8 1
849 128.83 radiation 1.0 270 > th dose dependent rect. 11 20
857 128.87 radiation 1.0 270 > th dose dependent rect. 12 18
870 128.95 radiation 40.0 270 < th dose independent rect. 7 16
883 128.97 humidity 50.0 270 > th dose dependent rect. 7 3
884 128.99 atmosphere 995.0 30 > th dose independent rect. 12 20
886 129.00 humidity 50.0 270 > th dose dependent rect. 8 1
903 129.12 radiation 1.0 270 > th dose dependent rect. 12 7
933 129.20 temperature 30.0 270 < th dose dependent rect. 3 2
971 129.36 atmosphere 1015.0 90 < th dose dependent rect. 12 7
976 129.41 temperature 30.0 270 < th dose independent rect. 15 21