BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0663900 Os03g0663900|Os03g0663900
         (228 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0663900  Conserved hypothetical protein                      166   2e-41

>Os03g0663900 Conserved hypothetical protein
          Length = 228

 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/184 (51%), Positives = 94/184 (51%)

Query: 1   MERSHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCEPSILATQVSLFCAPDMPTA 60
           MERSH                                 SCEPSILATQVSLFCAPDMPTA
Sbjct: 1   MERSHLAVLLGLLAFAAGVPAAAAATAVEGAQAATAEASCEPSILATQVSLFCAPDMPTA 60

Query: 61  QCCEPVVASVDLGGGVPCLCRVAAEPQLIISGLNATHLLTLYXXXXXXXXXXXXXXXXXE 120
           QCCEPVVASVDLGGGVPCLCRVAAEPQLIISGLNATHLLTLY                 E
Sbjct: 61  QCCEPVVASVDLGGGVPCLCRVAAEPQLIISGLNATHLLTLYAACGGLRPGGARLAAACE 120

Query: 121 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHDDSDHNKRVGPLPRGS 180
           G                                        QQHDDSDHNKRVGPLPRGS
Sbjct: 121 GPAPPASIVTAPPPPVAFRRKPPAREAPPPPPAAEKLSPPPQQHDDSDHNKRVGPLPRGS 180

Query: 181 PPPY 184
           PPPY
Sbjct: 181 PPPY 184



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,866,827
Number of extensions: 106527
Number of successful extensions: 278
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 131
Effective length of database: 11,971,043
Effective search space: 1568206633
Effective search space used: 1568206633
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)