BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0661500 Os03g0661500|AK100254
         (427 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0661500  Conserved hypothetical protein                      413   e-115

>Os03g0661500 Conserved hypothetical protein
          Length = 427

 Score =  413 bits (1062), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/427 (56%), Positives = 241/427 (56%)

Query: 1   MPSPLKEXXXXXXXXXXXXXXXXXXXXXXVQTGFPTSLADLVVKNHGXXXXXXXXXXXXX 60
           MPSPLKE                      VQTGFPTSLADLVVKNHG             
Sbjct: 1   MPSPLKERPAGRLGRLLAALRPARAGPLPVQTGFPTSLADLVVKNHGRLKKPSASASRRK 60

Query: 61  XXGGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
             GGPE                                                      
Sbjct: 61  KRGGPEAPPSPSPSPSPSPPPQPSSPPPPPPSPPPAAAVSVSPPTQPRPRPELPPVEAVL 120

Query: 121 RRQPKGRXXXXXXXXXXXXXXXXXXXXXIWSKKXXXXXXXXSFSLFLLESVXXXXXXXXX 180
           RRQPKGR                     IWSKK        SFSLFLLESV         
Sbjct: 121 RRQPKGRVFGLGLGFVSLVGVVSLALLVIWSKKVVAAVTVASFSLFLLESVRSSALSRRP 180

Query: 181 XXXXXNNKLDLDGRGYVSPIREVEPAXXXXXXXXXXXXXXILTIEERSEVGDDSIVAIEE 240
                NNKLDLDGRGYVSPIREVEPA              ILTIEERSEVGDDSIVAIEE
Sbjct: 181 RRPAANNKLDLDGRGYVSPIREVEPARASFSDSSRRSELSILTIEERSEVGDDSIVAIEE 240

Query: 241 RIAAGGDDSSNAKVKTKKRSWRKLIPRKLQKGMKGKEAEDSSGSFRSSEGNRGDATATDS 300
           RIAAGGDDSSNAKVKTKKRSWRKLIPRKLQKGMKGKEAEDSSGSFRSSEGNRGDATATDS
Sbjct: 241 RIAAGGDDSSNAKVKTKKRSWRKLIPRKLQKGMKGKEAEDSSGSFRSSEGNRGDATATDS 300

Query: 301 SDSRRGMRTKAADAFVARSMDSSPSFRGNGGDTDADAYSNATRVEIXXXXXXXXXXXXXX 360
           SDSRRGMRTKAADAFVARSMDSSPSFRGNGGDTDADAYSNATRVEI              
Sbjct: 301 SDSRRGMRTKAADAFVARSMDSSPSFRGNGGDTDADAYSNATRVEIDAPADVLAGDGDAV 360

Query: 361 XXTRSSXXXXXXXXXXXXXXXXXXXXXXFTVLCGVFISSVQRLPAGGDGNGDRSFTWWFR 420
             TRSS                      FTVLCGVFISSVQRLPAGGDGNGDRSFTWWFR
Sbjct: 361 GGTRSSVALLVVAVVLVGLVAGKLPAVVFTVLCGVFISSVQRLPAGGDGNGDRSFTWWFR 420

Query: 421 IKPKDVN 427
           IKPKDVN
Sbjct: 421 IKPKDVN 427



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.130    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,877,973
Number of extensions: 285435
Number of successful extensions: 1038
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1037
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 323
Effective length of database: 11,605,545
Effective search space: 3748591035
Effective search space used: 3748591035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)