BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0655500 Os03g0655500|Os03g0655500
(556 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0655500 PapD-like domain containing protein 753 0.0
>Os03g0655500 PapD-like domain containing protein
Length = 556
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/556 (73%), Positives = 410/556 (73%)
Query: 1 MDRLVIPEPTNEVVVRVEPGRPARGELTLRNAMHTMPVAFRLQPAVRSRFAVRPHTGILA 60
MDRLVIPEPTNEVVVRVEPGRPARGELTLRNAMHTMPVAFRLQPAVRSRFAVRPHTGILA
Sbjct: 1 MDRLVIPEPTNEVVVRVEPGRPARGELTLRNAMHTMPVAFRLQPAVRSRFAVRPHTGILA 60
Query: 61 PLAAVTVEVVYLASXXXXXXXXXXXXXXXXDAFLLHSVVAPGAAVREPVTALDSVNPEWF 120
PLAAVTVEVVYLAS DAFLLHSVVAPGAAVREPVTALDSVNPEWF
Sbjct: 61 PLAAVTVEVVYLASAAPEGPGGGGGAGRGEDAFLLHSVVAPGAAVREPVTALDSVNPEWF 120
Query: 121 SARRKQVFVDSGIRACFXXXXXXXXXXXXXXXXXXREVLDRSEPEWRAADAVDESGRTLL 180
SARRKQVFVDSGIRACF REVLDRSEPEWRAADAVDESGRTLL
Sbjct: 121 SARRKQVFVDSGIRACFVGAAVAARLVEAGAVEALREVLDRSEPEWRAADAVDESGRTLL 180
Query: 181 DLAVGLGRADIVQVLLEYGADADKPSRGRTPLETAAASGECLIAELLLANGATPAGSDAL 240
DLAVGLGRADIVQVLLEYGADADKPSRGRTPLETAAASGECLIAELLLANGATPAGSDAL
Sbjct: 181 DLAVGLGRADIVQVLLEYGADADKPSRGRTPLETAAASGECLIAELLLANGATPAGSDAL 240
Query: 241 HVAAAAGHNDVLKLLLGKXXXXXXXXXXXXXXXXXXXXIDAAGRDGKTPLRLAAEAGRXX 300
HVAAAAGHNDVLKLLLGK IDAAGRDGKTPLRLAAEAGR
Sbjct: 241 HVAAAAGHNDVLKLLLGKPASASPSSASSASFSCSFTSIDAAGRDGKTPLRLAAEAGRRD 300
Query: 301 XXXXXXXXXXXXXXXXXXXXXXXLHAAARRGDEVIARLILXXXXXXXXXXXXXXXKTAFE 360
LHAAARRGDEVIARLIL KTAFE
Sbjct: 301 AVKALLAAGARADARCGADGGTALHAAARRGDEVIARLILANGAAGTAAVRDAAGKTAFE 360
Query: 361 IAAEECHGGRIMDFLGLGEAILAAARKXXXXXXXXXXXXXXSVEGRDAHGWTPLMRAAFK 420
IAAEECHGGRIMDFLGLGEAILAAARK SVEGRDAHGWTPLMRAAFK
Sbjct: 361 IAAEECHGGRIMDFLGLGEAILAAARKGEARAVRRAADGGASVEGRDAHGWTPLMRAAFK 420
Query: 421 GRADTVRDLVDRGADMDATDAEGYTALHCAAEAGRADVVDLLLKSGANAKTTTXXXXXXX 480
GRADTVRDLVDRGADMDATDAEGYTALHCAAEAGRADVVDLLLKSGANAKTTT
Sbjct: 421 GRADTVRDLVDRGADMDATDAEGYTALHCAAEAGRADVVDLLLKSGANAKTTTVKGRSAA 480
Query: 481 XXXXXXXXXXXXXLLEKAGGVGRKEVAEKTSPAAVVGKAXXXXXXXXXXXXXXXXXXFGG 540
LLEKAGGVGRKEVAEKTSPAAVVGKA FGG
Sbjct: 481 EVAAAAGKSKVVRLLEKAGGVGRKEVAEKTSPAAVVGKAGSLDRRRRGRKGSSGAIRFGG 540
Query: 541 GKDGFETAAVAVGWSH 556
GKDGFETAAVAVGWSH
Sbjct: 541 GKDGFETAAVAVGWSH 556
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,105,795
Number of extensions: 475872
Number of successful extensions: 2077
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2073
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 450
Effective length of database: 11,501,117
Effective search space: 5175502650
Effective search space used: 5175502650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)