BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0652100 Os03g0652100|AK102019
(856 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0652100 CCR4-NOT complex, subunits 3 and 5 family protein 1550 0.0
Os03g0652600 229 5e-60
>Os03g0652100 CCR4-NOT complex, subunits 3 and 5 family protein
Length = 856
Score = 1550 bits (4013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 765/856 (89%), Positives = 765/856 (89%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD 60
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
Sbjct: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD 60
Query: 61 QIKTWIQSSEIKDKKALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPKTDPKEKA 120
QIKTWIQSSEIKDKKALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPKTDPKEKA
Sbjct: 61 QIKTWIQSSEIKDKKALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPKTDPKEKA 120
Query: 121 KAETRDWLNNVVSDLENQIDNFEAEVEGLSIKKGKQRPPRLVHLEKSITRHKAHIKKLES 180
KAETRDWLNNVVSDLENQIDNFEAEVEGLSIKKGKQRPPRLVHLEKSITRHKAHIKKLES
Sbjct: 121 KAETRDWLNNVVSDLENQIDNFEAEVEGLSIKKGKQRPPRLVHLEKSITRHKAHIKKLES 180
Query: 181 ILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVEELYSTLPMEKVEALEDMVSL 240
ILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVEELYSTLPMEKVEALEDMVSL
Sbjct: 181 ILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVEELYSTLPMEKVEALEDMVSL 240
Query: 241 APSSLVKGVASVSTTAVLSTKSSVATSPTQATVSAAPSLSVSQDQAEETASQESNPESAP 300
APSSLVKGVASVSTTAVLSTKSSVATSPTQATVSAAPSLSVSQDQAEETASQESNPESAP
Sbjct: 241 APSSLVKGVASVSTTAVLSTKSSVATSPTQATVSAAPSLSVSQDQAEETASQESNPESAP 300
Query: 301 QTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRPIVPTTTAAVLPASVTARSAP 360
QT PVRPIVPTTTAAVLPASVTARSAP
Sbjct: 301 QTPPSKVGSQPSVPVVPTTISTSTAAVSVSAETISSPVRPIVPTTTAAVLPASVTARSAP 360
Query: 361 ENIPAVTSAPANSSSTLKDDDNMSFPSRRSSPAVTEIGLGRGITRGLTSQGLGSAPISIG 420
ENIPAVTSAPANSSSTLKDDDNMSFPSRRSSPAVTEIGLGRGITRGLTSQGLGSAPISIG
Sbjct: 361 ENIPAVTSAPANSSSTLKDDDNMSFPSRRSSPAVTEIGLGRGITRGLTSQGLGSAPISIG 420
Query: 421 PVSGNGSVSALTDLSKRNMLNTDERINSGGISQQLISPLGNKAQPQQVLRXXXXXXXXXX 480
PVSGNGSVSALTDLSKRNMLNTDERINSGGISQQLISPLGNKAQPQQVLR
Sbjct: 421 PVSGNGSVSALTDLSKRNMLNTDERINSGGISQQLISPLGNKAQPQQVLRTTDTISSDSS 480
Query: 481 XXXXXXVLGGRIFSPPVVSGVQWRPQNTAGLQNQSEAGQFCGRPEISADQREKYXXXXXX 540
VLGGRIFSPPVVSGVQWRPQNTAGLQNQSEAGQFCGRPEISADQREKY
Sbjct: 481 NTNESTVLGGRIFSPPVVSGVQWRPQNTAGLQNQSEAGQFCGRPEISADQREKYLQRLQQ 540
Query: 541 XXXXXXXXNVSHITGISQKQFPSQQPNPLLXXXXXXXXXXXXXAGIGLGQVQVPESGHTK 600
NVSHITGISQKQFPSQQPNPLL AGIGLGQVQVPESGHTK
Sbjct: 541 VQQQGSLLNVSHITGISQKQFPSQQPNPLLQQFNSQSSSISSQAGIGLGQVQVPESGHTK 600
Query: 601 SEEQQQSFAEDVSVESVATAGANKHMSEDDTKIPFSNPSASITEGTQLSRDPDLPAGQPL 660
SEEQQQSFAEDVSVESVATAGANKHMSEDDTKIPFSNPSASITEGTQLSRDPDLPAGQPL
Sbjct: 601 SEEQQQSFAEDVSVESVATAGANKHMSEDDTKIPFSNPSASITEGTQLSRDPDLPAGQPL 660
Query: 661 QPGMXXXXXXXXXXXXXXDLGAIGDNLSVASASTSHDLLYNLQMLEAAFHRLPQPKDSER 720
QPGM DLGAIGDNLSVASASTSHDLLYNLQMLEAAFHRLPQPKDSER
Sbjct: 661 QPGMSSSGVGVIGRRSVSDLGAIGDNLSVASASTSHDLLYNLQMLEAAFHRLPQPKDSER 720
Query: 721 VKNYIPKHPAVTPASFPQIQAPVVSNPAFWERMGGDSLSTDLLFFAFYYQQNTYQQFLSA 780
VKNYIPKHPAVTPASFPQIQAPVVSNPAFWERMGGDSLSTDLLFFAFYYQQNTYQQFLSA
Sbjct: 721 VKNYIPKHPAVTPASFPQIQAPVVSNPAFWERMGGDSLSTDLLFFAFYYQQNTYQQFLSA 780
Query: 781 RELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSYVYFDFHVIDDGTGSGWCQRIKNDF 840
RELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSYVYFDFHVIDDGTGSGWCQRIKNDF
Sbjct: 781 RELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSYVYFDFHVIDDGTGSGWCQRIKNDF 840
Query: 841 TFEYNFLEDELSVQTN 856
TFEYNFLEDELSVQTN
Sbjct: 841 TFEYNFLEDELSVQTN 856
>Os03g0652600
Length = 844
Score = 229 bits (585), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 116/179 (64%), Positives = 121/179 (67%), Gaps = 51/179 (28%)
Query: 640 ASITEGTQLSRDPDLPAGQPLQPGMXXXXXXXXXXXXXXDLGAIGDNLSVASASTSHDLL 699
ASITEGTQLSRDPDLP
Sbjct: 679 ASITEGTQLSRDPDLP-------------------------------------------- 694
Query: 700 YNLQMLEAAFHRLPQPKDSERVKNYIPKHPAVTPASFPQIQAPVVSNPAFWERMGGDSLS 759
+AA+HRLPQPKDSERVKNYIPKHPAVTPASFPQIQAPVVSNPAFWERMGGDSLS
Sbjct: 695 ------DAAYHRLPQPKDSERVKNYIPKHPAVTPASFPQIQAPVVSNPAFWERMGGDSLS 748
Query: 760 TDLLFFAFYYQQNTYQQFLSARELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSYVY 818
T +LFFAFYYQQNTYQQFLSARELK+QSWRF RKYNTWFQRHVEPQVTTDE S +
Sbjct: 749 T-VLFFAFYYQQNTYQQFLSARELKEQSWRFQRKYNTWFQRHVEPQVTTDELSAKSLTH 806
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.127 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,142,792
Number of extensions: 1076202
Number of successful extensions: 3707
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3705
Number of HSP's successfully gapped: 2
Length of query: 856
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 747
Effective length of database: 11,344,475
Effective search space: 8474322825
Effective search space used: 8474322825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 160 (66.2 bits)