BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0638900 Os03g0638900|AK108094
         (294 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0638900  Cyclin-like F-box domain containing protein         379   e-105
Os12g0609900  Cyclin-like F-box domain containing protein         162   2e-40

>Os03g0638900 Cyclin-like F-box domain containing protein
          Length = 294

 Score =  379 bits (974), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/294 (70%), Positives = 207/294 (70%)

Query: 1   MADRTTRSTPPPQWAELPTDCLVHVFRRLDLDELASAAPLVCRGWRRAAADPSXXXXXXX 60
           MADRTTRSTPPPQWAELPTDCLVHVFRRLDLDELASAAPLVCRGWRRAAADPS       
Sbjct: 1   MADRTTRSTPPPQWAELPTDCLVHVFRRLDLDELASAAPLVCRGWRRAAADPSLWRALDL 60

Query: 61  XXXXXXXFMPWXXXXXXXXRLHGVHRFTLAGFLRLCVARAAGTVXXXXXXXXXXXXXXXH 120
                  FMPW        RLHGVHRFTLAGFLRLCVARAAGTV               H
Sbjct: 61  RRDHLARFMPWGALAGALARLHGVHRFTLAGFLRLCVARAAGTVADLALPPLLSSSELDH 120

Query: 121 VAAECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTHLELDSKPSSFPAVAAALALHCPDL 180
           VAAEC                             THLELDSKPSSFPAVAAALALHCPDL
Sbjct: 121 VAAECPALRRLALPELPPADDARLPSLLPRWRRLTHLELDSKPSSFPAVAAALALHCPDL 180

Query: 181 AVLRVTSGSVKPEDXXXXXXXSPLRGRLRSLCLDRCYLPRQEXXXXXXXXXXXXXXREFT 240
           AVLRVTSGSVKPED       SPLRGRLRSLCLDRCYLPRQE              REFT
Sbjct: 181 AVLRVTSGSVKPEDAAAMAAASPLRGRLRSLCLDRCYLPRQELLAILAGCGGAAPLREFT 240

Query: 241 ARFCVGFDDKDEEVLARGAAIERFDIGGSRLLDEPDGDATNGDDYCDSSYVDVI 294
           ARFCVGFDDKDEEVLARGAAIERFDIGGSRLLDEPDGDATNGDDYCDSSYVDVI
Sbjct: 241 ARFCVGFDDKDEEVLARGAAIERFDIGGSRLLDEPDGDATNGDDYCDSSYVDVI 294



>Os12g0609900 Cyclin-like F-box domain containing protein
          Length = 312

 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/284 (36%), Positives = 136/284 (47%), Gaps = 9/284 (3%)

Query: 13  QWAELPTDCLVHVFRRLDLDELASAAPLVCRGWRRAAADPSX--XXXXXXXXXXXXXFMP 70
           +W ++  DCLV +FRRL LD++A+AAPLVCR WR AA D S                FMP
Sbjct: 36  RWGDMDADCLVEIFRRLPLDDVAAAAPLVCRSWRAAARDASLWRALDLRGGGGAAARFMP 95

Query: 71  WXXXXXXXXRLHGVHRFTLAGFLRLCVARAAGTVXXXXXXXXXXXXXXXHVAAECXXXXX 130
           W          +GV RFT AG+LRLCVARAAG                  V+  C     
Sbjct: 96  WSPLAAAFAARYGVRRFTFAGYLRLCVARAAGRAAELALPPLLGAPDLDLVSLRCTELRR 155

Query: 131 XXXXXXXXXXXXXXXXXXXXXXXXTHLELDSKPSSFPAVAAALALHCPDLAVLRVTSGSV 190
                                    HLEL+ +P+SFPA AA +   CP  + L++ +G++
Sbjct: 156 VALPALSAADDARLPGLVARWRRLEHLELEHRPASFPATAARVGAGCPGFSSLKM-AGAI 214

Query: 191 KPEDXXXXXXXSPLRGRLRSLCLDRCYLPRQEXXXXXXXXXXXXXXREFTARFCVGFDDK 250
           +  D        P   RL+ LCLD CYLPR E                 +A+ CVGFD+ 
Sbjct: 215 RDVDAAAMAASLP---RLKRLCLDGCYLPRHE---LLAVIHGCLELESLSAKHCVGFDEG 268

Query: 251 DEEVLARGAAIERFDIGGSRLLDEPDGDATNGDDYCDSSYVDVI 294
           DEEV    A I R ++GGSRL+D+ D    +G D   SSYVDV+
Sbjct: 269 DEEVAREAAMIGRLEVGGSRLVDKFDQRDVDGLDDDTSSYVDVM 312



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.138    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,041,536
Number of extensions: 265364
Number of successful extensions: 1012
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1007
Number of HSP's successfully gapped: 2
Length of query: 294
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 194
Effective length of database: 11,814,401
Effective search space: 2291993794
Effective search space used: 2291993794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 155 (64.3 bits)