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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0638900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.37 (0.0366) R2 : 0.614
β1 : 1.31 (0.144) R2dD : 0.0872 R2D : 0.148
β2 : 1.87 (0.0925) R2dC : 0.348 R2C : 0.377
β3 : 1.2 (0.133) R2dE : 0.0892 R2E : 0.171
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.069 (0.0823) R2dN8 : 0.000922 R2N8 : 0.00241
σ : 0.673
deviance : 208.85
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_____
C
peak time of C : 4.42
E
wheather : temperature
threshold : 19.14
memory length : 3172
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
208.41 0.678 5.34 1.49 1.87 1.43 0.000227 1.02 0.121 4.41 13.81 3198 -- --
209.09 0.673 5.36 1.3 1.84 1.28 0.0232 -- 0.0916 4.42 16.99 3178 -- --
208.41 0.672 5.34 1.49 1.87 1.43 -- 1.02 0.121 4.41 13.77 3199 -- --
208.85 0.673 5.37 1.31 1.87 1.2 -- -- 0.069 4.42 19.14 3172 -- --
379.26 0.907 5.38 1.42 -- 1.73 -- 0.843 0.0842 -- 8.164 2666 -- --
246.08 0.735 5.31 1.83 1.91 -- -0.0264 -- 0.336 4.31 -- -- -- --
246.09 0.735 5.31 1.83 1.91 -- -- -- 0.336 4.31 -- -- -- --
378.78 0.906 5.4 1.32 -- 1.93 -- -- 0.0413 -- 11.37 1203 -- --
240.01 0.722 5.42 -- 1.82 1.99 -- -- -0.16 4.48 10.4 4110 -- --
442.04 0.982 5.32 1.91 -- -- -- -- 0.387 -- -- -- -- --
334.4 0.855 5.36 -- 1.94 -- -- -- 0.132 4.29 -- -- -- --
414.48 0.948 5.45 -- -- 2.27 -- -- -0.159 -- 6.574 4064 -- --
537.9 1.08 5.37 -- -- -- -- -- 0.175 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 203.38 temperature 10 270 > th dose dependent rect. 11 22
2 203.70 temperature 15 270 > th dose dependent rect. 12 20
4 203.91 temperature 10 270 > th dose dependent rect. 12 18
12 205.18 temperature 20 1440 > th dose dependent rect. 1 1
14 205.37 temperature 20 270 > th dose independent rect. 2 15
18 205.68 temperature 30 4320 < th dose dependent rect. 3 1
20 205.78 temperature 30 4320 < th dose dependent rect. 1 3
21 205.80 temperature 10 4320 > th dose dependent rect. 3 1
22 205.83 temperature 30 4320 < th dose dependent rect. 1 1
23 205.87 temperature 10 4320 > th dose dependent rect. 1 3
28 205.93 temperature 10 4320 > th dose dependent rect. 1 1
37 206.09 temperature 10 720 > th dose dependent rect. 17 15
49 206.21 temperature 20 1440 > th dose dependent rect. 23 6
190 207.26 temperature 25 4320 < th dose independent rect. 23 1
221 207.47 temperature 10 720 > th dose dependent sin 11 NA
276 207.77 atmosphere 1015 270 < th dose dependent rect. 13 17
318 208.00 temperature 30 720 < th dose dependent sin 10 NA
330 208.04 temperature 30 720 < th dose dependent rect. 17 17
383 208.31 temperature 10 4320 > th dose dependent sin 11 NA
390 208.33 temperature 10 270 > th dose dependent rect. 24 22
408 208.42 temperature 30 4320 < th dose dependent sin 11 NA
475 208.64 temperature 15 270 > th dose dependent rect. 24 8
493 208.69 temperature 25 4320 > th dose independent rect. 23 1
557 208.87 temperature 10 270 > th dose dependent rect. 12 9
637 209.07 temperature 15 720 > th dose dependent rect. 17 22
641 209.08 atmosphere 995 90 > th dose dependent rect. 18 9
645 209.09 temperature 20 270 > th dose independent rect. 1 7
679 209.16 temperature 15 30 > th dose dependent rect. 14 19
784 209.34 temperature 15 720 > th dose dependent rect. 20 19
807 209.38 temperature 30 720 < th dose dependent rect. 22 19
819 209.40 temperature 30 720 < th dose dependent rect. 19 20