BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0616600 Os03g0616600|Os03g0616600
(1188 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0616600 Armadillo-like helical domain containing protein 1990 0.0
>Os03g0616600 Armadillo-like helical domain containing protein
Length = 1188
Score = 1990 bits (5155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1011/1188 (85%), Positives = 1011/1188 (85%)
Query: 1 MPPAXXXXXTAAEVDGEAVPSSXXXXXXXXXXXXXXXXXXXXXXXXHLKHLVHSLPDSHP 60
MPPA TAAEVDGEAVPSS HLKHLVHSLPDSHP
Sbjct: 1 MPPARRRRRTAAEVDGEAVPSSAADLLALAATLFPAAADAPLRDPPHLKHLVHSLPDSHP 60
Query: 61 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWGDLLPPLARLHDRXXXX 120
V RWGDLLPPLARLHDR
Sbjct: 61 VLLSLPGALAPPLSDGGAPGYPPRAAAVLLHLLLTHPSHPPRWGDLLPPLARLHDRLAQL 120
Query: 121 XXXXXXXXXXXXXCFELAWRAAAPGREAVVAQTLPYLFAEALSCGSATARPVXXXXXXXX 180
CFELAWRAAAPGREAVVAQTLPYLFAEALSCGSATARPV
Sbjct: 121 ATDDPPLAALAVACFELAWRAAAPGREAVVAQTLPYLFAEALSCGSATARPVLRRLLALR 180
Query: 181 XXXXXXXXXXXXSISDFKMLLLRCFVSPLFLKAEEGRKXXXXXXXXXXXXAREGLELIRA 240
SISDFKMLLLRCFVSPLFLKAEEGRK AREGLELIRA
Sbjct: 181 DALALLDYDDDDSISDFKMLLLRCFVSPLFLKAEEGRKLLSLVLGVSEGLAREGLELIRA 240
Query: 241 QVGMPGVKRAALVAYGEVVFRAWKDGGWVRGEVGEAFLQGMLEGAVHARSKELAKAARKL 300
QVGMPGVKRAALVAYGEVVFRAWKDGGWVRGEVGEAFLQGMLEGAVHARSKELAKAARKL
Sbjct: 241 QVGMPGVKRAALVAYGEVVFRAWKDGGWVRGEVGEAFLQGMLEGAVHARSKELAKAARKL 300
Query: 301 LSAFVEQRMVAGVEKLIFQLAEPVLFRSLQVANSNVRHNSXXXXXXXXXXXXXXVTKDVN 360
LSAFVEQRMVAGVEKLIFQLAEPVLFRSLQVANSNVRHNS VTKDVN
Sbjct: 301 LSAFVEQRMVAGVEKLIFQLAEPVLFRSLQVANSNVRHNSLHLLLDLFPLEDPDVTKDVN 360
Query: 361 DPLLEKQYFLLDKLLMDDCPEIRTVAIEGLCRILNQFWEVIPSLTISKFLSKIVDDISKD 420
DPLLEKQYFLLDKLLMDDCPEIRTVAIEGLCRILNQFWEVIPSLTISKFLSKIVDDISKD
Sbjct: 361 DPLLEKQYFLLDKLLMDDCPEIRTVAIEGLCRILNQFWEVIPSLTISKFLSKIVDDISKD 420
Query: 421 SCTEVRVSTINGLIYLLDNPQSHEILKVLLPRLSDMVSDPALSVRSSAVDLLLAIRDLRS 480
SCTEVRVSTINGLIYLLDNPQSHEILKVLLPRLSDMVSDPALSVRSSAVDLLLAIRDLRS
Sbjct: 421 SCTEVRVSTINGLIYLLDNPQSHEILKVLLPRLSDMVSDPALSVRSSAVDLLLAIRDLRS 480
Query: 481 FQFNKVVGLGTXXXXXXNDHPRVAQKITKLLIPSYFPTKLPLKEACARCIALIKRSPTAG 540
FQFNKVVGLGT NDHPRVAQKITKLLIPSYFPTKLPLKEACARCIALIKRSPTAG
Sbjct: 481 FQFNKVVGLGTLLSSLSNDHPRVAQKITKLLIPSYFPTKLPLKEACARCIALIKRSPTAG 540
Query: 541 ARFCEFALSEGSPPRSLVELIKVSITLALAPTGMNSEQTDGLVIASANLIKXXXXXXXXX 600
ARFCEFALSEGSPPRSLVELIKVSITLALAPTGMNSEQTDGLVIASANLIK
Sbjct: 541 ARFCEFALSEGSPPRSLVELIKVSITLALAPTGMNSEQTDGLVIASANLIKSLSEERSSL 600
Query: 601 XXXXXFFANAKLKLLFKTEISVGARSALLSMAPVVSPDDLSALHDECMNVVMNAAGVSTQ 660
FFANAKLKLLFKTEISVGARSALLSMAPVVSPDDLSALHDECMNVVMNAAGVSTQ
Sbjct: 601 ASLREFFANAKLKLLFKTEISVGARSALLSMAPVVSPDDLSALHDECMNVVMNAAGVSTQ 660
Query: 661 QGCQEAVLAAHKLVFSSGWSDEMFEALTNILQSKVSCFAEIYDIEPPICPVATSXXXXXX 720
QGCQEAVLAAHKLVFSSGWSDEMFEALTNILQSKVSCFAEIYDIEPPICPVATS
Sbjct: 661 QGCQEAVLAAHKLVFSSGWSDEMFEALTNILQSKVSCFAEIYDIEPPICPVATSKRKKGK 720
Query: 721 XXXXTPAKSGHDIGNGSSSEDFDIVAGASWQINDILKDEEKRVAFLQSSYSDVAFSSLKV 780
TPAKSGHDIGNGSSSEDFDIVAGASWQINDILKDEEKRVAFLQSSYSDVAFSSLKV
Sbjct: 721 SLKKTPAKSGHDIGNGSSSEDFDIVAGASWQINDILKDEEKRVAFLQSSYSDVAFSSLKV 780
Query: 781 ICQVYIEQCLQFDSLNATPLLAYLSLATHSALQDIDQTDISTSESTTINHSLDHLLNCFD 840
ICQVYIEQCLQFDSLNATPLLAYLSLATHSALQDIDQTDISTSESTTINHSLDHLLNCFD
Sbjct: 781 ICQVYIEQCLQFDSLNATPLLAYLSLATHSALQDIDQTDISTSESTTINHSLDHLLNCFD 840
Query: 841 KLLNESVTGSTNSLKLKQNKKSARQKHHHGVPEGNALRGTVNVYMLGTSILKFIVDTITI 900
KLLNESVTGSTNSLKLKQNKKSARQKHHHGVPEGNALRGTVNVYMLGTSILKFIVDTITI
Sbjct: 841 KLLNESVTGSTNSLKLKQNKKSARQKHHHGVPEGNALRGTVNVYMLGTSILKFIVDTITI 900
Query: 901 KLISDNKVGCLNFALSFTKYASSAIKMHQEQSSSFKGNDLKDILMLIRSSFTYAAKLLHL 960
KLISDNKVGCLNFALSFTKYASSAIKMHQEQSSSFKGNDLKDILMLIRSSFTYAAKLLHL
Sbjct: 901 KLISDNKVGCLNFALSFTKYASSAIKMHQEQSSSFKGNDLKDILMLIRSSFTYAAKLLHL 960
Query: 961 VLANSIESQSPPEEAFFLANNLLDLVPSVESAAGSKFALSLVSVVKQWLPVVIMGLGCRW 1020
VLANSIESQSPPEEAFFLANNLLDLVPSVESAAGSKFALSLVSVVKQWLPVVIMGLGCRW
Sbjct: 961 VLANSIESQSPPEEAFFLANNLLDLVPSVESAAGSKFALSLVSVVKQWLPVVIMGLGCRW 1020
Query: 1021 LIGPQAEGNMCDFGGSCLPLWVVALAKNELLDDEKPRXXXXXXXXXXXXXXXRKLAEMMV 1080
LIGPQAEGNMCDFGGSCLPLWVVALAKNELLDDEKPR RKLAEMMV
Sbjct: 1021 LIGPQAEGNMCDFGGSCLPLWVVALAKNELLDDEKPRDDDQSEQASEDSQSSRKLAEMMV 1080
Query: 1081 ILLKKGSPKILDSVAGVFLSTLKLALQRAEYGVVLGLTRFVCVRLLGSDSSASEKLHLAH 1140
ILLKKGSPKILDSVAGVFLSTLKLALQRAEYGVVLGLTRFVCVRLLGSDSSASEKLHLAH
Sbjct: 1081 ILLKKGSPKILDSVAGVFLSTLKLALQRAEYGVVLGLTRFVCVRLLGSDSSASEKLHLAH 1140
Query: 1141 DSLRENFFEIDKHVMDDLVDSEESRQQLESAKALIRSILSDGHFGHAM 1188
DSLRENFFEIDKHVMDDLVDSEESRQQLESAKALIRSILSDGHFGHAM
Sbjct: 1141 DSLRENFFEIDKHVMDDLVDSEESRQQLESAKALIRSILSDGHFGHAM 1188
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 31,379,961
Number of extensions: 1099545
Number of successful extensions: 2665
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2661
Number of HSP's successfully gapped: 1
Length of query: 1188
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1076
Effective length of database: 11,187,833
Effective search space: 12038108308
Effective search space used: 12038108308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 162 (67.0 bits)