Os03g0616600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os03g0616600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.69 | 0.372 | 9.73 | 0.73 | 0.236 | -1.22 | -0.0454 | 0.525 | 0.458 | 12.2 | 19.4 | 12 | -- | -- |
| 62.84 | 0.369 | 9.74 | 0.648 | 0.233 | -1.25 | 0.0293 | -- | 0.444 | 12.1 | 18.04 | 12 | -- | -- |
| 62.69 | 0.369 | 9.73 | 0.719 | 0.237 | -1.23 | -- | 0.46 | 0.456 | 12.3 | 19.28 | 12 | -- | -- |
| 62.79 | 0.369 | 9.74 | 0.655 | 0.221 | -1.35 | -- | -- | 0.433 | 12 | 16.17 | 12 | -- | -- |
| 64.45 | 0.374 | 9.74 | 0.698 | -- | -1.07 | -- | 0.456 | 0.421 | -- | 18.19 | 139 | -- | -- |
| 83.76 | 0.429 | 9.79 | 0.381 | 0.27 | -- | 0.0438 | -- | 0.226 | 4.25 | -- | -- | -- | -- |
| 83.77 | 0.429 | 9.79 | 0.381 | 0.27 | -- | -- | -- | 0.226 | 4.26 | -- | -- | -- | -- |
| 64.36 | 0.374 | 9.75 | 0.639 | -- | -1.25 | -- | -- | 0.4 | -- | 14.84 | 137 | -- | -- |
| 72.74 | 0.397 | 9.76 | -- | 0.177 | -0.985 | -- | -- | 0.337 | 10.8 | 19.66 | 3 | -- | -- |
| 87.71 | 0.438 | 9.79 | 0.392 | -- | -- | -- | -- | 0.233 | -- | -- | -- | -- | -- |
| 87.59 | 0.438 | 9.8 | -- | 0.277 | -- | -- | -- | 0.183 | 4.24 | -- | -- | -- | -- |
| 73.95 | 0.401 | 9.78 | -- | -- | -0.868 | -- | -- | 0.281 | -- | 19.53 | 110 | -- | -- |
| 91.76 | 0.447 | 9.8 | -- | -- | -- | -- | -- | 0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 2 | 60.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 5 | 60.16 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 11 | 60.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 13 | 60.47 | temperature | 20 | 270 | > th | dose dependent | sin | 7 | NA |
| 23 | 61.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 29 | 61.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 42 | 61.73 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 51 | 62.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 53 | 62.06 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 65 | 62.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 79 | 62.61 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 82 | 62.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 88 | 62.74 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 89 | 62.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 94 | 62.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 126 | 63.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 128 | 63.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 136 | 63.09 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 21 |
| 144 | 63.15 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 175 | 63.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 195 | 63.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 197 | 63.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 232 | 63.75 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 270 | 63.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 277 | 63.95 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 285 | 63.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 291 | 64.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 329 | 64.18 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 332 | 64.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 336 | 64.20 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 351 | 64.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 408 | 64.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 14 |
| 424 | 64.46 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 17 |
| 475 | 64.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 486 | 64.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 498 | 64.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 600 | 64.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 9 |
| 611 | 64.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 631 | 65.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 857 | 65.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 885 | 65.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 930 | 65.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 934 | 65.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 944 | 65.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |