BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0594700 Os03g0594700|AK101832
         (863 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0594700  Conserved hypothetical protein                     1753   0.0  

>Os03g0594700 Conserved hypothetical protein
          Length = 863

 Score = 1753 bits (4541), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 851/863 (98%), Positives = 851/863 (98%)

Query: 1   MPGAACKKTNLISPRRSPRLKNIHVIYGEHSETNYPTLGPVKTEVIDLEEIASPSNPEFN 60
           MPGAACKKTNLISPRRSPRLKNIHVIYGEHSETNYPTLGPVKTEVIDLEEIASPSNPEFN
Sbjct: 1   MPGAACKKTNLISPRRSPRLKNIHVIYGEHSETNYPTLGPVKTEVIDLEEIASPSNPEFN 60

Query: 61  DDSVGDEDFQNVSLKDLRAQCKAKNRRALKVDSERPDFKNQRQCGKRNLEDEVPKEEVDL 120
           DDSVGDEDFQNVSLKDLRAQCKAKNRRALKVDSERPDFKNQRQCGKRNLEDEVPKEEVDL
Sbjct: 61  DDSVGDEDFQNVSLKDLRAQCKAKNRRALKVDSERPDFKNQRQCGKRNLEDEVPKEEVDL 120

Query: 121 DEPIIAFRQKRQKTSPTKSNRTMGKPISLNAVKLQDTTLRREETEPIKLPPLEVTSHDSM 180
           DEPIIAFRQKRQKTSPTKSNRTMGKPISLNAVKLQDTTLRREETEPIKLPPLEVTSHDSM
Sbjct: 121 DEPIIAFRQKRQKTSPTKSNRTMGKPISLNAVKLQDTTLRREETEPIKLPPLEVTSHDSM 180

Query: 181 STAEKMERSAADVKHSTIAAGNTEEIVGENILYAEMENTPLSTGAVISGRSPDIFCEIKT 240
           STAEKMERSAADVKHSTIAAGNTEEIVGENILYAEMENTPLSTGAVISGRSPDIFCEIKT
Sbjct: 181 STAEKMERSAADVKHSTIAAGNTEEIVGENILYAEMENTPLSTGAVISGRSPDIFCEIKT 240

Query: 241 EDEDIYSDEQVGVSSPGKDSFQDSFAELHREPIEYDGCQQHSGVIPQPIELKDVSDDSCE 300
           EDEDIYSDEQVGVSSPGKDSFQDSFAELHREPIEYDGCQQHSGVIPQPIELKDVSDDSCE
Sbjct: 241 EDEDIYSDEQVGVSSPGKDSFQDSFAELHREPIEYDGCQQHSGVIPQPIELKDVSDDSCE 300

Query: 301 LANSIKAYCLDDIILQNKTNDSLSSLDITDEMSNCHKTSGNITNLDEDKSSVVNDYLVCS 360
           LANSIKAYCLDDIILQNKTNDSLSSLDITDEMSNCHKTSGNITNLDEDKSSVVNDYLVCS
Sbjct: 301 LANSIKAYCLDDIILQNKTNDSLSSLDITDEMSNCHKTSGNITNLDEDKSSVVNDYLVCS 360

Query: 361 VNMSCEDHIDIDEYWYPRDLHGSTLESTKTIESSTDQCNAEVGSPSVVIQSDLCGSAESN 420
           VNMSCEDHIDIDEYWYPRDLHGSTLESTKTIESSTDQCNAEVGSPSVVIQSDLCGSAESN
Sbjct: 361 VNMSCEDHIDIDEYWYPRDLHGSTLESTKTIESSTDQCNAEVGSPSVVIQSDLCGSAESN 420

Query: 421 FTSLAEVVQMKADGQFDSLVQHSVGTKDVLPIDVGHATIDCTFAFNKTLDSVKAANFTTQ 480
           FTSLAEVVQMKADGQFDSLVQHSVGTKDVLPIDVGHATIDCTFAFNKTLDSVKAANFTTQ
Sbjct: 421 FTSLAEVVQMKADGQFDSLVQHSVGTKDVLPIDVGHATIDCTFAFNKTLDSVKAANFTTQ 480

Query: 481 DGRLESIVYDALNNHAQRKSTETETPVGVSGAAIISSPFVSEGTDREPTGSKAPHGGQLL 540
           DGRLESIVYDALNNHAQRKSTETETPVGVSGAAIISSPFVSEGTDREPTGSKAPHGGQLL
Sbjct: 481 DGRLESIVYDALNNHAQRKSTETETPVGVSGAAIISSPFVSEGTDREPTGSKAPHGGQLL 540

Query: 541 LPCVTEWLSKDTDQLKVTVDDDICKTNSDQGSREQFGLQPQLLQSCSDLDKVCVXXXXXX 600
           LPCVTEWLSKDTDQLKVTVDDDICKTNSDQGSREQFGLQPQLLQSCSDLDKVCV      
Sbjct: 541 LPCVTEWLSKDTDQLKVTVDDDICKTNSDQGSREQFGLQPQLLQSCSDLDKVCVTSESSS 600

Query: 601 XXXXXXMPAGSLDSTAASLDTDGQSEKLQPFIDEGALEEHAPKKLLSKRKIMSPTSQEKL 660
                 MPAGSLDSTAASLDTDGQSEKLQPFIDEGALEEHAPKKLLSKRKIMSPTSQEKL
Sbjct: 601 PEETQEMPAGSLDSTAASLDTDGQSEKLQPFIDEGALEEHAPKKLLSKRKIMSPTSQEKL 660

Query: 661 CSALTGIDLCGVQRLKRKILLEDCGKTRRPNGRSSLSPTSKGILKGTESPSPQKTTCTCM 720
           CSALTGIDLCGVQRLKRKILLEDCGKTRRPNGRSSLSPTSKGILKGTESPSPQKTTCTCM
Sbjct: 661 CSALTGIDLCGVQRLKRKILLEDCGKTRRPNGRSSLSPTSKGILKGTESPSPQKTTCTCM 720

Query: 721 KAASVILDAEKAVEFSQRQMHDIENIASKLMRSLNHMRSIVDGNLLSESHSLLPTFNTAE 780
           KAASVILDAEKAVEFSQRQMHDIENIASKLMRSLNHMRSIVDGNLLSESHSLLPTFNTAE
Sbjct: 721 KAASVILDAEKAVEFSQRQMHDIENIASKLMRSLNHMRSIVDGNLLSESHSLLPTFNTAE 780

Query: 781 IRAASEDALEVERTTRKWLTIMNKDCNRFCKILRLAGKKAVSHSEVPRKRKKITFADETG 840
           IRAASEDALEVERTTRKWLTIMNKDCNRFCKILRLAGKKAVSHSEVPRKRKKITFADETG
Sbjct: 781 IRAASEDALEVERTTRKWLTIMNKDCNRFCKILRLAGKKAVSHSEVPRKRKKITFADETG 840

Query: 841 GKLCHVKMFTDGQNSLLSECHSE 863
           GKLCHVKMFTDGQNSLLSECHSE
Sbjct: 841 GKLCHVKMFTDGQNSLLSECHSE 863



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,083,341
Number of extensions: 1255334
Number of successful extensions: 2593
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2593
Number of HSP's successfully gapped: 1
Length of query: 863
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 754
Effective length of database: 11,344,475
Effective search space: 8553734150
Effective search space used: 8553734150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)