BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0587600 Os03g0587600|Os03g0587600
         (752 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0587600  Zinc finger, CCHC-type domain containing protein    796   0.0  

>Os03g0587600 Zinc finger, CCHC-type domain containing protein
          Length = 752

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/590 (72%), Positives = 425/590 (72%)

Query: 1   MEIMQQXXXXXXXXXXXXXXXXXXXXXXXXXMTTAQVEAAIATLHGKKQGLREAYDSLVL 60
           MEIMQQ                         MTTAQVEAAIATLHGKKQGLREAYDSLVL
Sbjct: 1   MEIMQQLAAAATATATATATPLCLPEPPPTAMTTAQVEAAIATLHGKKQGLREAYDSLVL 60

Query: 61  HSPIPLPFRWXXXXXXXXXXXXXIHARFXXXXXXXXXXXXXXXXXXXXHXXXXXXXXXXX 120
           HSPIPLPFRW             IHARF                    H           
Sbjct: 61  HSPIPLPFRWSDLDSHLSSLQSSIHARFSQLQALQASRPAPPAAAAASHDEDVEMEDVQE 120

Query: 121 XXXXXXXAPPSTVQVKEEPVEAAACASNTAGERAGVGQDGFVRPGGMAAAKMASXXXXXX 180
                  APPSTVQVKEEPVEAAACASNTAGERAGVGQDGFVRPGGMAAAKMAS      
Sbjct: 121 QGEDEVMAPPSTVQVKEEPVEAAACASNTAGERAGVGQDGFVRPGGMAAAKMASPSKVQV 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXSMDAPRLTDVCKRAXXXXXXXLCARNGSGTAQSPPI 240
                                   SMDAPRLTDVCKRA       LCARNGSGTAQSPPI
Sbjct: 181 KEEPVEVSPSPPAGATGLTAAACASMDAPRLTDVCKRAGGGGGQGLCARNGSGTAQSPPI 240

Query: 241 PSCPVLQQQHTAGAPNGSHPVLRQXXXXXXXXXXXXXFRPQQHMGKPRDTCDLRKAAAPN 300
           PSCPVLQQQHTAGAPNGSHPVLRQ             FRPQQHMGKPRDTCDLRKAAAPN
Sbjct: 241 PSCPVLQQQHTAGAPNGSHPVLRQHAANAMNAGHSAAFRPQQHMGKPRDTCDLRKAAAPN 300

Query: 301 TGDRLPLQWRQQRVHANLTCXXXXXXXXXXXXXXXQQRVGVFPSPTPQIVGSSPPPPSQA 360
           TGDRLPLQWRQQRVHANLTC               QQRVGVFPSPTPQIVGSSPPPPSQA
Sbjct: 301 TGDRLPLQWRQQRVHANLTCPLPPPVVAGSSSSPPQQRVGVFPSPTPQIVGSSPPPPSQA 360

Query: 361 RVGEANVTNPSRQQFTASAPHAGDGQLQKRPPWQRLQRVGVANPMNAGDLPPQKPHFTAN 420
           RVGEANVTNPSRQQFTASAPHAGDGQLQKRPPWQRLQRVGVANPMNAGDLPPQKPHFTAN
Sbjct: 361 RVGEANVTNPSRQQFTASAPHAGDGQLQKRPPWQRLQRVGVANPMNAGDLPPQKPHFTAN 420

Query: 421 ARNAGEHXXXXXXXXXXVAKPTDAAAGDLLPQQKQLMANAPNAGEHLLPEQQKQQPVTAA 480
           ARNAGEH          VAKPTDAAAGDLLPQQKQLMANAPNAGEHLLPEQQKQQPVTAA
Sbjct: 421 ARNAGEHPFQEQQQPPPVAKPTDAAAGDLLPQQKQLMANAPNAGEHLLPEQQKQQPVTAA 480

Query: 481 KPANAPPLQHAANATNPAXXXXXXXXXXXXXXPPTATNLPQTKQEQHHLFMADDGANARN 540
           KPANAPPLQHAANATNPA              PPTATNLPQTKQEQHHLFMADDGANARN
Sbjct: 481 KPANAPPLQHAANATNPAVLRRQRQRQWVRLRPPTATNLPQTKQEQHHLFMADDGANARN 540

Query: 541 PLSPPPPCGMAKPPNSGDPLTDQNNQQLMANTHSAPTPVSTPLVASNQSE 590
           PLSPPPPCGMAKPPNSGDPLTDQNNQQLMANTHSAPTPVSTPLVASNQSE
Sbjct: 541 PLSPPPPCGMAKPPNSGDPLTDQNNQQLMANTHSAPTPVSTPLVASNQSE 590




 Score =  162 bits (409), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/96 (78%), Positives = 75/96 (78%)

Query: 657 ISNMSKVIXXXXXXXXXXXXXXXXXXXXXFNKNVPGDHHQKNKNAGQLCYRCGCRGHWSR 716
           ISNMSKVI                     FNKNVPGDHHQKNKNAGQLCYRCGCRGHWSR
Sbjct: 657 ISNMSKVIGKGNKGQGNGNPQLNKNGNPQFNKNVPGDHHQKNKNAGQLCYRCGCRGHWSR 716

Query: 717 ICRTPEHLVKLYQQDRKAKLQAGANTNTVYVGAMTD 752
           ICRTPEHLVKLYQQDRKAKLQAGANTNTVYVGAMTD
Sbjct: 717 ICRTPEHLVKLYQQDRKAKLQAGANTNTVYVGAMTD 752



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.128    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,266,501
Number of extensions: 903883
Number of successful extensions: 4804
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4791
Number of HSP's successfully gapped: 2
Length of query: 752
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 644
Effective length of database: 11,396,689
Effective search space: 7339467716
Effective search space used: 7339467716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 160 (66.2 bits)