BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0582000 Os03g0582000|AK120119
         (318 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0582000  Formiminotransferase, N-terminal domain contai...   558   e-159
Os06g0128000                                                      228   5e-60

>Os03g0582000 Formiminotransferase, N-terminal domain containing protein
          Length = 318

 Score =  558 bits (1437), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 273/318 (85%), Positives = 273/318 (85%)

Query: 1   MEEQKHTDXXXXXXXXXXXXVICCKLYISESQNAKVVDAITRIGQKDPEVVLLSKFEDDH 60
           MEEQKHTD            VICCKLYISESQNAKVVDAITRIGQKDPEVVLLSKFEDDH
Sbjct: 1   MEEQKHTDKAKAKLSMLKSKVICCKLYISESQNAKVVDAITRIGQKDPEVVLLSKFEDDH 60

Query: 61  YNRVRYTLASYIINENSTGEVKFSPMRRVLLEMIEKAFSTINLETHTGTHPRIGVIDDMS 120
           YNRVRYTLASYIINENSTGEVKFSPMRRVLLEMIEKAFSTINLETHTGTHPRIGVIDDMS
Sbjct: 61  YNRVRYTLASYIINENSTGEVKFSPMRRVLLEMIEKAFSTINLETHTGTHPRIGVIDDMS 120

Query: 121 FHPLNQATMEDAAQLAKTVASDIGNFLQVPVFLYGAAHPTGKPVTAVRRELGYFQPNYMG 180
           FHPLNQATMEDAAQLAKTVASDIGNFLQVPVFLYGAAHPTGKPVTAVRRELGYFQPNYMG
Sbjct: 121 FHPLNQATMEDAAQLAKTVASDIGNFLQVPVFLYGAAHPTGKPVTAVRRELGYFQPNYMG 180

Query: 181 IQWMGQVLPDILPVKPDEGPDHVSRERGAIMIGAAPLPLNYNVPVLSKDIXXXXXXXXXX 240
           IQWMGQVLPDILPVKPDEGPDHVSRERGAIMIGAAPLPLNYNVPVLSKDI          
Sbjct: 181 IQWMGQVLPDILPVKPDEGPDHVSRERGAIMIGAAPLPLNYNVPVLSKDIPTIRRITRRV 240

Query: 241 XXXXXXXXXXQALALSHGDDCTEIACFLDPDHVSADXXXXXXXXXXXXXGLEVEKGYFTD 300
                     QALALSHGDDCTEIACFLDPDHVSAD             GLEVEKGYFTD
Sbjct: 241 TGRGGGLPTVQALALSHGDDCTEIACFLDPDHVSADQVQQQVEQIAAEQGLEVEKGYFTD 300

Query: 301 FSKDAMLEKYFKIVLSVD 318
           FSKDAMLEKYFKIVLSVD
Sbjct: 301 FSKDAMLEKYFKIVLSVD 318



>Os06g0128000 
          Length = 303

 Score =  228 bits (581), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 119/294 (40%), Positives = 164/294 (55%), Gaps = 7/294 (2%)

Query: 21  VICCKLYISESQNAKVVDAITRIGQKDPEVVLL-SKFEDDHYNRVRYTLASYIINENSTG 79
           + CCKLYISES+N   + AI +  +      ++ ++F DD YNRV YTL + +    +  
Sbjct: 8   LACCKLYISESRNDAALRAIEQAARGGGGGAVVVNRFTDDAYNRVGYTLVAPLTPSPAP- 66

Query: 80  EVKFSPMRRVLLEMIEKAFSTINLETHTGTHPRIGVIDDMSFHPLNQATMEDAAQLAKTV 139
                P+R  +L M+  A   I+   H GTHPR+G +D + FHPL  A++   A LA  V
Sbjct: 67  ----PPLRHAVLGMVRAALEAIDFGAHAGTHPRLGAVDHICFHPLAHASLRHVADLAGAV 122

Query: 140 ASDIGNFLQVPVFLYGAAHPTGKPVTAVRRELGYFQPNYMGIQWMGQVLPDILPVKPDEG 199
           A+DIG+ LQVP FLYGAAH  G+ + ++RR+LGYF+PN  G QW G    D LPV PD G
Sbjct: 123 AADIGDELQVPTFLYGAAHREGRTLASIRRQLGYFKPNSSGDQWRGAPETDALPVAPDAG 182

Query: 200 PDHVSRERGAIMIGAAPLPLNYNVPVLSKDIXXXXXXXXXXXXXXXXXXXXQALALSHGD 259
           P+   R +G +++GA     NYNVPV + D+                    QA+ L+HG 
Sbjct: 183 PERPPRSKGVVVVGATSWVDNYNVPVHTGDVEAARRIARAVSERGGGLPSVQAMGLAHGG 242

Query: 260 DCTEIAC-FLDPDHVSADXXXXXXXXXXXXXGLEVEKGYFTDFSKDAMLEKYFK 312
              E+AC  LDP  V A+             GL V KGYFTDFS+D +++ YF+
Sbjct: 243 GVVEVACNLLDPARVGAEQVQGMVERLAAGEGLSVGKGYFTDFSQDKIVDLYFR 296



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,898,377
Number of extensions: 328156
Number of successful extensions: 683
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 679
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 217
Effective length of database: 11,762,187
Effective search space: 2552394579
Effective search space used: 2552394579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)