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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0582000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Formiminotransferase, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.46 (0.0518) R2 : 0.88
β1 : -1.82 (0.187) R2dD : 0.0254 R2D : 0.0347
β2 : 12.7 (0.352) R2dC : 2.42 R2C : 0.3
β3 : -5.01 (0.293) R2dE : 0.547 R2E : -1.57
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.236 (0.11) R2dN8 : 0.00175 R2N8 : -0.00127
σ : 0.956
deviance : 421.21
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_____
C
peak time of C : 17
E
wheather : temperature
threshold : 14.8
memory length : 268
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.07
open length of G : 15.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
409.39 0.951 6.46 -1.63 13 -5.25 3.2 -3.92 0.263 17 14.98 267 7.12 15.3
418.21 0.952 6.46 -1.84 12.9 -5.18 -1.2 -- 0.233 17 14.84 277 7.03 15.3
413.06 0.947 6.46 -1.73 12.9 -5.13 -- -1.58 0.255 17 14.8 265 7.08 15.3
421.21 0.956 6.46 -1.82 12.7 -5.01 -- -- 0.236 17 14.8 268 7.07 15.4
2068.9 2.13 6.16 -1.9 -- 3.44 -- -0.722 0.622 -- 14.8 265 7.08 15.3
688.07 1.23 6.32 -1.9 7.16 -- -1.12 -- 0.477 17.2 -- -- -- --
691.21 1.23 6.32 -1.9 7.15 -- -- -- 0.472 17.2 -- -- -- --
478.11 1.02 6.22 -2.05 -- 7.61 -- -- 0.343 -- -24.06 438 9.32 8.22
504.68 1.05 6.41 -- 12.7 -5 -- -- 0.421 17 15.16 274 7.02 15.4
3367.14 2.71 6.23 -2.15 -- -- -- -- 0.292 -- -- -- -- --
786.39 1.31 6.27 -- 7.19 -- -- -- 0.684 17.2 -- -- -- --
584.76 1.13 6.17 -- -- 7.1 -- -- 0.623 -- -1.629 399 9.46 8.72
3489.22 2.76 6.18 -- -- -- -- -- 0.531 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 418.68 temperature 15.0 270 > th dose independent rect. 7 15
2 420.15 temperature 10.0 270 > th dose dependent rect. 12 17
3 421.34 temperature 15.0 270 > th dose independent rect. 19 16
7 426.92 temperature 20.0 270 > th dose independent rect. 11 8
8 428.09 radiation 1.0 270 > th dose independent rect. 11 8
30 430.43 radiation 40.0 270 < th dose dependent rect. 22 9
32 431.17 wind 9.0 270 < th dose independent rect. 7 15
33 431.52 temperature 10.0 270 > th dose dependent rect. 11 8
36 432.21 temperature 30.0 270 < th dose independent rect. 16 8
40 433.71 wind 7.0 270 < th dose independent rect. 22 9
41 433.77 humidity 70.0 270 > th dose independent rect. 22 9
42 433.89 radiation 20.0 270 < th dose independent rect. 22 9
45 434.41 temperature 10.0 270 > th dose independent rect. 22 9
46 434.41 temperature 30.0 270 < th dose independent rect. 22 9
47 434.41 humidity 50.0 270 > th dose independent rect. 22 9
49 434.41 atmosphere 995.0 270 > th dose independent rect. 22 9
55 435.59 atmosphere 995.0 270 > th dose independent rect. 18 17
61 437.55 wind 1.0 270 > th dose independent rect. 11 7
66 439.28 precipitation 0.1 270 < th dose independent rect. 22 9
67 439.28 precipitation 0.1 270 < th dose dependent rect. 22 9
69 439.64 precipitation 0.1 270 < th dose independent rect. 11 8
70 439.64 precipitation 0.1 270 < th dose dependent rect. 11 8
72 440.49 wind 9.0 270 < th dose independent rect. 18 17
73 440.54 temperature 10.0 270 > th dose independent rect. 11 7
74 440.54 atmosphere 1015.0 270 < th dose independent rect. 11 7
102 442.99 atmosphere 1015.0 270 < th dose independent rect. 23 8
107 443.90 humidity 70.0 270 > th dose independent rect. 16 8
108 444.11 precipitation 0.1 270 < th dose independent rect. 12 17
109 444.11 precipitation 0.1 270 < th dose dependent rect. 12 17
114 445.02 humidity 90.0 270 < th dose independent rect. 12 6
117 445.20 temperature 15.0 270 > th dose independent rect. 5 7
119 445.48 wind 9.0 270 < th dose independent rect. 5 7
122 445.82 humidity 70.0 270 > th dose independent rect. 17 6
126 446.35 precipitation 0.1 270 < th dose independent rect. 5 7
127 446.35 precipitation 0.1 270 < th dose dependent rect. 5 7
128 446.43 wind 9.0 270 < th dose independent rect. 11 7
134 446.96 atmosphere 995.0 270 > th dose independent rect. 5 7
135 446.96 atmosphere 1015.0 270 < th dose independent rect. 5 7
136 446.96 temperature 10.0 270 > th dose independent rect. 12 17
138 447.06 radiation 1.0 270 < th dose dependent rect. 16 7
142 447.82 radiation 1.0 270 > th dose independent sin 17 NA
147 448.15 temperature 15.0 10 > th dose independent rect. 20 17
161 449.64 humidity 50.0 270 > th dose independent rect. 18 17
162 449.65 radiation 20.0 270 < th dose dependent rect. 16 9
171 449.93 radiation 1.0 270 < th dose independent rect. 16 7
174 450.17 precipitation 0.1 270 < th dose independent rect. 18 17
175 450.17 precipitation 0.1 270 < th dose dependent rect. 18 17
182 450.79 temperature 15.0 270 > th dose independent rect. 17 7
189 451.78 wind 9.0 270 < th dose independent rect. 12 17
190 452.04 radiation 1.0 270 > th dose independent rect. 4 8
205 452.36 temperature 10.0 10 > th dose dependent rect. 13 7
216 452.93 precipitation 0.1 10 < th dose independent rect. 13 7
217 452.93 precipitation 0.1 10 < th dose dependent rect. 13 7
229 454.06 radiation 1.0 270 < th dose dependent sin 18 NA
232 454.30 atmosphere 995.0 270 > th dose independent rect. 7 15
239 454.80 wind 1.0 10 > th dose independent rect. 13 7
242 455.00 radiation 10.0 270 < th dose dependent rect. 23 15
263 456.79 precipitation 0.1 270 < th dose independent rect. 7 15
264 456.79 precipitation 0.1 270 < th dose dependent rect. 7 15
267 456.83 radiation 1.0 270 < th dose independent sin 18 NA
285 457.80 radiation 40.0 30 < th dose independent rect. 12 8
290 458.03 temperature 30.0 270 < th dose independent rect. 17 18
296 458.34 radiation 10.0 90 > th dose independent rect. 7 6
297 458.40 wind 9.0 10 < th dose independent rect. 20 17
322 459.11 temperature 10.0 10 > th dose independent rect. 13 7
324 459.11 atmosphere 1010.0 10 < th dose independent rect. 13 7
327 459.11 atmosphere 995.0 10 > th dose independent rect. 20 17
369 460.98 radiation 20.0 270 < th dose independent rect. 16 9
380 461.79 temperature 15.0 1440 > th dose independent rect. 14 7
438 463.54 atmosphere 1015.0 270 < th dose independent rect. 12 17
444 463.76 wind 9.0 10 < th dose independent rect. 13 7
448 463.88 humidity 50.0 270 > th dose dependent rect. 16 7
502 465.32 wind 9.0 270 < th dose dependent rect. 23 8
504 465.34 temperature 15.0 270 > th dose independent rect. 18 5
508 465.38 wind 9.0 270 < th dose dependent rect. 6 6
510 465.47 wind 1.0 270 > th dose independent rect. 12 17
526 465.79 humidity 50.0 270 > th dose dependent rect. 22 9
537 466.31 atmosphere 995.0 270 > th dose independent rect. 17 8
570 467.44 humidity 50.0 270 > th dose independent rect. 5 7
579 467.69 temperature 10.0 1440 > th dose independent rect. 21 17
582 467.69 atmosphere 995.0 1440 > th dose independent rect. 21 17
595 468.21 atmosphere 1015.0 270 < th dose independent rect. 7 15
653 469.53 humidity 90.0 30 < th dose dependent rect. 20 17
658 469.81 wind 9.0 270 < th dose dependent rect. 7 4
667 470.17 temperature 10.0 10 > th dose dependent rect. 13 19
705 471.50 temperature 10.0 270 > th dose dependent rect. 5 7
710 471.78 radiation 30.0 90 < th dose dependent rect. 1 17
728 472.03 temperature 10.0 270 > th dose independent rect. 1 16
729 472.03 atmosphere 1015.0 270 < th dose independent rect. 1 16
730 472.07 humidity 50.0 270 > th dose independent rect. 6 5
735 472.44 wind 9.0 270 < th dose independent rect. 17 8
743 472.75 radiation 1.0 270 < th dose independent rect. 23 16
744 472.75 temperature 10.0 90 > th dose dependent rect. 7 6
814 474.64 wind 9.0 270 < th dose dependent rect. 7 15
831 475.38 radiation 40.0 90 < th dose independent rect. 12 19
844 475.95 radiation 20.0 90 < th dose dependent sin 4 NA
846 475.99 radiation 20.0 90 < th dose independent rect. 1 18
849 476.37 atmosphere 995.0 270 > th dose independent rect. 11 7
859 476.45 radiation 40.0 90 < th dose dependent rect. 1 8
860 476.52 precipitation 0.1 270 < th dose independent rect. 1 16
861 476.52 precipitation 0.1 270 < th dose dependent rect. 1 16
892 477.21 atmosphere 1015.0 270 < th dose dependent rect. 12 6
895 477.36 wind 1.0 270 > th dose independent rect. 5 7
898 477.40 radiation 20.0 90 < th dose dependent rect. 1 14
924 477.72 radiation 1.0 270 < th dose dependent sin 6 NA
944 477.99 humidity 50.0 270 > th dose independent rect. 7 16
974 478.56 radiation 20.0 90 < th dose independent rect. 1 8
994 478.86 temperature 10.0 270 > th dose dependent rect. 23 8