BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0572300 Os03g0572300|AK061375
(232 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0572300 Modifier of rudimentary, Modr family protein 420 e-118
Os03g0186800 Modifier of rudimentary, Modr family protein 378 e-105
>Os03g0572300 Modifier of rudimentary, Modr family protein
Length = 232
Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/232 (90%), Positives = 210/232 (90%)
Query: 1 MSWRFPLFGSSQQQQPDTNFQDNPTQPWYXXXXXXXXXXXXXXXXXXXXXXQRASDNPQS 60
MSWRFPLFGSSQQQQPDTNFQDNPTQPWY QRASDNPQS
Sbjct: 1 MSWRFPLFGSSQQQQPDTNFQDNPTQPWYPPSVLGSSSHPSLPSSSSGSPHQRASDNPQS 60
Query: 61 LHGQPSPAEAAGIIARLKDKSVDDLQRLLKDKEAYSAFFNSLDQVKTQNNLRDELKKETV 120
LHGQPSPAEAAGIIARLKDKSVDDLQRLLKDKEAYSAFFNSLDQVKTQNNLRDELKKETV
Sbjct: 61 LHGQPSPAEAAGIIARLKDKSVDDLQRLLKDKEAYSAFFNSLDQVKTQNNLRDELKKETV 120
Query: 121 QLARDNLEKEQRISEIRNQCTIIRTTELAAAQDRLADLERQRDEVMKSYSPAALLDKLQK 180
QLARDNLEKEQRISEIRNQCTIIRTTELAAAQDRLADLERQRDEVMKSYSPAALLDKLQK
Sbjct: 121 QLARDNLEKEQRISEIRNQCTIIRTTELAAAQDRLADLERQRDEVMKSYSPAALLDKLQK 180
Query: 181 LMAKLDEESEELHQKFLEKDIDLPTFVQKHKKLRTAYHKQALLHLAGKTSVR 232
LMAKLDEESEELHQKFLEKDIDLPTFVQKHKKLRTAYHKQALLHLAGKTSVR
Sbjct: 181 LMAKLDEESEELHQKFLEKDIDLPTFVQKHKKLRTAYHKQALLHLAGKTSVR 232
>Os03g0186800 Modifier of rudimentary, Modr family protein
Length = 233
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/233 (81%), Positives = 202/233 (86%), Gaps = 1/233 (0%)
Query: 1 MSWRFPLFGSSQQQQPDTNFQDNPTQPWYXXXXXXXXXXXXXXXXXXXXXXQRASDNPQS 60
MSWRFPLFG+SQQQQPD NFQDNPTQPWY QRASDN QS
Sbjct: 1 MSWRFPLFGNSQQQQPDPNFQDNPTQPWYPQSVVGSSSHPSTPSSSNVGPHQRASDNSQS 60
Query: 61 L-HGQPSPAEAAGIIARLKDKSVDDLQRLLKDKEAYSAFFNSLDQVKTQNNLRDELKKET 119
QPSPAEAAGIIARLKDKSVD+LQRLLKDKEAY+AFFNSLDQVKTQNNLRDEL+KET
Sbjct: 61 SSRAQPSPAEAAGIIARLKDKSVDELQRLLKDKEAYNAFFNSLDQVKTQNNLRDELRKET 120
Query: 120 VQLARDNLEKEQRISEIRNQCTIIRTTELAAAQDRLADLERQRDEVMKSYSPAALLDKLQ 179
VQLAR+NLEKEQRI E+RNQCTIIRTTELAAAQDRLA+LERQ+DE+M+SYSPAALLDKLQ
Sbjct: 121 VQLARENLEKEQRILELRNQCTIIRTTELAAAQDRLAELERQKDEIMRSYSPAALLDKLQ 180
Query: 180 KLMAKLDEESEELHQKFLEKDIDLPTFVQKHKKLRTAYHKQALLHLAGKTSVR 232
K MAKLDEESEELHQKFLEKDIDLPTFVQK+KKLR AYHKQALLHLAGKTS+R
Sbjct: 181 KSMAKLDEESEELHQKFLEKDIDLPTFVQKYKKLRAAYHKQALLHLAGKTSLR 233
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.128 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,652,923
Number of extensions: 235313
Number of successful extensions: 842
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 840
Number of HSP's successfully gapped: 2
Length of query: 232
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 134
Effective length of database: 11,918,829
Effective search space: 1597123086
Effective search space used: 1597123086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)