Os03g0572300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Modifier of rudimentary, Modr family protein.
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Os03g0572300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Modifier of rudimentary, Modr family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.43 | 0.172 | 11 | 0.291 | 0.324 | 0.264 | 0.239 | 2.24 | 0.0845 | 20.5 | 12 | 7135 | -- | -- |
| 16.5 | 0.189 | 11.1 | -0.144 | 0.298 | 0.183 | 0.264 | -- | 0.00301 | 21 | 28.15 | 4571 | -- | -- |
| 13.6 | 0.172 | 11 | 0.284 | 0.319 | 0.265 | -- | 2.27 | 0.0865 | 20.4 | 11.2 | 6882 | -- | -- |
| 16.49 | 0.189 | 11.1 | -0.209 | 0.318 | 0.206 | -- | -- | 0.00525 | 20.5 | 28.9 | 4477 | -- | -- |
| 19.18 | 0.204 | 11 | 0.276 | -- | 0.294 | -- | 2.32 | 0.0771 | -- | 11.36 | 6536 | -- | -- |
| 17.87 | 0.198 | 11.1 | -0.147 | 0.323 | -- | 0.246 | -- | -0.0222 | 20.7 | -- | -- | -- | -- |
| 18.06 | 0.199 | 11.1 | -0.155 | 0.323 | -- | -- | -- | -0.0221 | 20.6 | -- | -- | -- | -- |
| 21.87 | 0.218 | 11.1 | -0.229 | -- | 0.222 | -- | -- | -0.046 | -- | 27.95 | 6479 | -- | -- |
| 17.58 | 0.195 | 11.1 | -- | 0.319 | 0.172 | -- | -- | 0.0274 | 20.4 | 29.3 | 4383 | -- | -- |
| 23.95 | 0.229 | 11.1 | -0.156 | -- | -- | -- | -- | -0.0249 | -- | -- | -- | -- | -- |
| 18.7 | 0.202 | 11.1 | -- | 0.324 | -- | -- | -- | -0.0048 | 20.6 | -- | -- | -- | -- |
| 22.98 | 0.223 | 11.1 | -- | -- | 0.195 | -- | -- | 0.0279 | -- | 29 | 4955 | -- | -- |
| 24.6 | 0.231 | 11.1 | -- | -- | -- | -- | -- | -0.0076 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.13 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 13.13 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 5 |
| 3 | 13.13 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 4 | 13.14 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 153 | 13.46 | wind | 7 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 179 | 13.49 | wind | 7 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 180 | 13.49 | temperature | 10 | 4320 | > th | dose dependent | sin | 16 | NA |
| 222 | 13.53 | temperature | 30 | 4320 | < th | dose dependent | sin | 16 | NA |
| 319 | 13.60 | temperature | 15 | 14400 | > th | dose independent | rect. | 4 | 17 |
| 324 | 13.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 6 |
| 334 | 13.61 | temperature | 15 | 14400 | > th | dose independent | rect. | 13 | 20 |
| 356 | 13.62 | temperature | 15 | 14400 | > th | dose independent | rect. | 13 | 18 |
| 372 | 13.62 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 381 | 13.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 385 | 13.63 | temperature | 15 | 14400 | > th | dose independent | rect. | 14 | 16 |
| 434 | 13.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 5 |
| 506 | 13.66 | temperature | 15 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 507 | 13.66 | temperature | 15 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 508 | 13.66 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 558 | 13.66 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 20 |
| 559 | 13.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 577 | 13.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 621 | 13.68 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 677 | 13.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 680 | 13.69 | temperature | 15 | 14400 | > th | dose independent | sin | 11 | NA |
| 683 | 13.69 | wind | 7 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 684 | 13.69 | wind | 7 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 740 | 13.70 | temperature | 15 | 14400 | > th | dose independent | rect. | 1 | 8 |
| 763 | 13.70 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 776 | 13.70 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 811 | 13.71 | temperature | 15 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 812 | 13.71 | temperature | 15 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 824 | 13.71 | temperature | 15 | 14400 | < th | dose independent | rect. | 13 | 17 |
| 881 | 13.72 | temperature | 15 | 14400 | > th | dose independent | sin | 7 | NA |
| 883 | 13.72 | temperature | 15 | 14400 | > th | dose independent | sin | 4 | NA |
| 886 | 13.72 | temperature | 15 | 14400 | > th | dose independent | no | NA | NA |
| 907 | 13.72 | temperature | 15 | 14400 | < th | dose independent | rect. | 15 | 15 |
| 918 | 13.72 | temperature | 15 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 982 | 13.73 | temperature | 15 | 14400 | > th | dose independent | rect. | 1 | 4 |