BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0568600 Os03g0568600|AK102228
         (500 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0568600  DTW domain containing protein                       941   0.0  

>Os03g0568600 DTW domain containing protein
          Length = 500

 Score =  941 bits (2432), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/500 (92%), Positives = 464/500 (92%)

Query: 1   MAANQGEAHRREPDQRRPMCGVCTKXXXXXXXXXXXXXXXDTAVGVTVLQHLMEAGHPLN 60
           MAANQGEAHRREPDQRRPMCGVCTK               DTAVGVTVLQHLMEAGHPLN
Sbjct: 1   MAANQGEAHRREPDQRRPMCGVCTKPLRLCLCGCLRRPPLDTAVGVTVLQHLMEAGHPLN 60

Query: 61  STRVARLGLRNLAVALVGDVNHRASFHLRTLDXXXXXXXXNHDRPDGPGEIQVLEXXXXX 120
           STRVARLGLRNLAVALVGDVNHRASFHLRTLD        NHDRPDGPGEIQVLE     
Sbjct: 61  STRVARLGLRNLAVALVGDVNHRASFHLRTLDAAAAAGGGNHDRPDGPGEIQVLEGDGFG 120

Query: 121 XXXXXXXXPVQCEGETLDSAICSNGISGESGGAVSCARRDYVTKGINASSDLGVKAANIR 180
                   PVQCEGETLDSAICSNGISGESGGAVSCARRDYVTKGINASSDLGVKAANIR
Sbjct: 121 GGTGGPAGPVQCEGETLDSAICSNGISGESGGAVSCARRDYVTKGINASSDLGVKAANIR 180

Query: 181 GSSDIGGEILDLVDIPDRIGFDLDGEICSVKSDLGGGEELGFQSMKRNGYCSDSERLGSS 240
           GSSDIGGEILDLVDIPDRIGFDLDGEICSVKSDLGGGEELGFQSMKRNGYCSDSERLGSS
Sbjct: 181 GSSDIGGEILDLVDIPDRIGFDLDGEICSVKSDLGGGEELGFQSMKRNGYCSDSERLGSS 240

Query: 241 ANQTGNSFVDGIHGENHHSIGEVNGNLPRHLVENASEFQMATAQNCNGIPRENVGTVAAI 300
           ANQTGNSFVDGIHGENHHSIGEVNGNLPRHLVENASEFQMATAQNCNGIPRENVGTVAAI
Sbjct: 241 ANQTGNSFVDGIHGENHHSIGEVNGNLPRHLVENASEFQMATAQNCNGIPRENVGTVAAI 300

Query: 301 GQDWTVKNMDKCSITYTEKELKIEIERGVKPKIRWLSRGPLGQSAVSNGFTVTKIQMKKS 360
           GQDWTVKNMDKCSITYTEKELKIEIERGVKPKIRWLSRGPLGQSAVSNGFTVTKIQMKKS
Sbjct: 301 GQDWTVKNMDKCSITYTEKELKIEIERGVKPKIRWLSRGPLGQSAVSNGFTVTKIQMKKS 360

Query: 361 KQTGEVSVFEEFSITIPPKSALLFPCQRAISIDASDCQLQHLIVLDGTWAKAQRMYHENP 420
           KQTGEVSVFEEFSITIPPKSALLFPCQRAISIDASDCQLQHLIVLDGTWAKAQRMYHENP
Sbjct: 361 KQTGEVSVFEEFSITIPPKSALLFPCQRAISIDASDCQLQHLIVLDGTWAKAQRMYHENP 420

Query: 421 WLQLLPHVKLESDGVSLYSEVRHEPRAGCLSTIESIVVAMRKLGEDAKGLDDLLDVFESM 480
           WLQLLPHVKLESDGVSLYSEVRHEPRAGCLSTIESIVVAMRKLGEDAKGLDDLLDVFESM
Sbjct: 421 WLQLLPHVKLESDGVSLYSEVRHEPRAGCLSTIESIVVAMRKLGEDAKGLDDLLDVFESM 480

Query: 481 IADQRRCKDENWKQKLESKT 500
           IADQRRCKDENWKQKLESKT
Sbjct: 481 IADQRRCKDENWKQKLESKT 500



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,269,804
Number of extensions: 643908
Number of successful extensions: 1529
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1529
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 395
Effective length of database: 11,553,331
Effective search space: 4563565745
Effective search space used: 4563565745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)