BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0568400 Os03g0568400|Os03g0568400
         (69 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0568400                                                      130   2e-31
Os08g0271850                                                       88   1e-18
Os09g0312400                                                       82   7e-17
Os06g0272400                                                       80   4e-16

>Os03g0568400 
          Length = 69

 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/69 (89%), Positives = 62/69 (89%)

Query: 1  MPKWIPKGMDPNSACXXXXXXXAYVEYMDNGSQDYHVSSSYKWVVDKDTQVRLTMFLPEM 60
          MPKWIPKGMDPNSAC       AYVEYMDNGSQDYHVSSSYKWVVDKDTQVRLTMFLPEM
Sbjct: 1  MPKWIPKGMDPNSACRVVVRVVAYVEYMDNGSQDYHVSSSYKWVVDKDTQVRLTMFLPEM 60

Query: 61 LPQKRFPQN 69
          LPQKRFPQN
Sbjct: 61 LPQKRFPQN 69



>Os08g0271850 
          Length = 651

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 41/49 (83%)

Query: 1  MPKWIPKGMDPNSACXXXXXXXAYVEYMDNGSQDYHVSSSYKWVVDKDT 49
          MPKWIPKGMDPNSAC       AYVEYMDNGSQDYHVSS +KWVVDKDT
Sbjct: 1  MPKWIPKGMDPNSACRVVVRVVAYVEYMDNGSQDYHVSSPHKWVVDKDT 49



>Os09g0312400 
          Length = 590

 Score = 82.4 bits (202), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 37/48 (77%), Positives = 38/48 (79%)

Query: 2  PKWIPKGMDPNSACXXXXXXXAYVEYMDNGSQDYHVSSSYKWVVDKDT 49
          PKW+PKGMDPNSAC       AYVEYMDNGSQDYHVSS  KWVVDKD 
Sbjct: 23 PKWLPKGMDPNSACRVVINVVAYVEYMDNGSQDYHVSSVIKWVVDKDV 70



>Os06g0272400 
          Length = 623

 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 41/48 (85%)

Query: 2  PKWIPKGMDPNSACXXXXXXXAYVEYMDNGSQDYHVSSSYKWVVDKDT 49
          PKW+PKGMDPNSAC       AYVEYMDNGSQDYHVS+S+KWVVDKDT
Sbjct: 20 PKWLPKGMDPNSACKVVVRVVAYVEYMDNGSQDYHVSTSHKWVVDKDT 67



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.132    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,322,660
Number of extensions: 69802
Number of successful extensions: 171
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 4
Length of query: 69
Length of database: 17,035,801
Length adjustment: 41
Effective length of query: 28
Effective length of database: 14,895,027
Effective search space: 417060756
Effective search space used: 417060756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)