Os03g0568400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0568400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.02 | 0.404 | 3.04 | 0.189 | 0.087 | -0.195 | -1.02 | 1.08 | 0.0845 | 17.9 | 20.82 | 300 | -- | -- |
| 77.89 | 0.411 | 3.06 | -0.00227 | 0.0639 | -0.295 | -0.511 | -- | 0.0723 | 19 | 21 | 439 | -- | -- |
| 76.32 | 0.407 | 3.03 | 0.184 | 0.102 | -0.212 | -- | 0.911 | 0.0908 | 17.9 | 20.71 | 299 | -- | -- |
| 78.29 | 0.412 | 3.07 | -0.0205 | 0.0964 | -0.307 | -- | -- | 0.0363 | 19 | 20.57 | 520 | -- | -- |
| 76.54 | 0.407 | 3.04 | 0.119 | -- | -0.195 | -- | 0.818 | 0.0787 | -- | 20.8 | 299 | -- | -- |
| 80.51 | 0.421 | 3.08 | -0.131 | 0.0568 | -- | -0.54 | -- | -0.0301 | 18.7 | -- | -- | -- | -- |
| 81.25 | 0.422 | 3.08 | -0.123 | 0.0551 | -- | -- | -- | -0.0317 | 19.1 | -- | -- | -- | -- |
| 78.77 | 0.413 | 3.07 | -0.024 | -- | -0.288 | -- | -- | 0.0319 | -- | 20.57 | 520 | -- | -- |
| 78.3 | 0.412 | 3.07 | -- | 0.0972 | -0.314 | -- | -- | 0.0377 | 19.3 | 20.6 | 520 | -- | -- |
| 81.41 | 0.422 | 3.08 | -0.124 | -- | -- | -- | -- | -0.0327 | -- | -- | -- | -- | -- |
| 81.64 | 0.423 | 3.08 | -- | 0.0564 | -- | -- | -- | -0.0181 | 19 | -- | -- | -- | -- |
| 78.78 | 0.413 | 3.07 | -- | -- | -0.295 | -- | -- | 0.0333 | -- | 20.52 | 520 | -- | -- |
| 81.81 | 0.422 | 3.08 | -- | -- | -- | -- | -- | -0.019 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.82 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 12 | 6 |
| 2 | 67.03 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 16 | 3 |
| 3 | 67.08 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 16 | 2 |
| 4 | 67.09 | temperature | 20.0 | 10 | < th | dose independent | rect. | 16 | 3 |
| 7 | 67.25 | humidity | 90.0 | 90 | > th | dose independent | rect. | 16 | 1 |
| 8 | 67.25 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 16 | 1 |
| 11 | 67.31 | temperature | 20.0 | 90 | < th | dose independent | rect. | 16 | 1 |
| 38 | 67.59 | humidity | 90.0 | 90 | > th | dose independent | rect. | 16 | 3 |
| 50 | 68.38 | temperature | 20.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 137 | 71.17 | radiation | 1.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 139 | 71.17 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 199 | 72.09 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 249 | 72.76 | wind | 3.0 | 90 | < th | dose dependent | rect. | 17 | 1 |
| 250 | 72.78 | wind | 3.0 | 10 | < th | dose independent | rect. | 18 | 1 |
| 259 | 72.90 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 10 |
| 286 | 73.09 | wind | 3.0 | 90 | < th | dose independent | rect. | 17 | 1 |
| 311 | 73.32 | temperature | 20.0 | 90 | > th | dose independent | rect. | 23 | 22 |
| 317 | 73.39 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 10 | 6 |
| 324 | 73.52 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 19 |
| 355 | 73.78 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 15 |
| 363 | 73.81 | temperature | 20.0 | 270 | < th | dose independent | rect. | 23 | 19 |
| 364 | 73.81 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 9 | 10 |
| 379 | 73.88 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 17 |
| 399 | 73.98 | temperature | 20.0 | 720 | > th | dose independent | rect. | 2 | 16 |
| 400 | 73.98 | temperature | 20.0 | 90 | < th | dose independent | rect. | 1 | 18 |
| 402 | 73.99 | temperature | 20.0 | 720 | < th | dose independent | sin | 2 | NA |
| 411 | 74.02 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 13 |
| 418 | 74.04 | temperature | 20.0 | 720 | > th | dose independent | sin | 2 | NA |
| 439 | 74.13 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 447 | 74.15 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 12 |
| 450 | 74.16 | temperature | 20.0 | 270 | > th | dose independent | sin | 21 | NA |
| 460 | 74.18 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 462 | 74.19 | temperature | 20.0 | 270 | < th | dose independent | sin | 21 | NA |
| 465 | 74.19 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 466 | 74.19 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 467 | 74.19 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 468 | 74.19 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 479 | 74.20 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 482 | 74.21 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 485 | 74.21 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 9 |
| 486 | 74.21 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 19 |
| 520 | 74.22 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 536 | 74.23 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 563 | 74.26 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 594 | 74.28 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 7 |
| 595 | 74.28 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 15 | NA |
| 608 | 74.29 | temperature | 20.0 | 90 | > th | dose independent | rect. | 2 | 19 |
| 611 | 74.29 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 653 | 74.33 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 3 | NA |
| 658 | 74.33 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 10 |
| 659 | 74.33 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 12 |
| 671 | 74.34 | temperature | 25.0 | 720 | < th | dose dependent | sin | 2 | NA |
| 696 | 74.36 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 701 | 74.36 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 706 | 74.36 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 710 | 74.36 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 6 | 16 |
| 722 | 74.37 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 750 | 74.39 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 832 | 74.43 | humidity | 90.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 847 | 74.43 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 6 |
| 867 | 74.44 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 876 | 74.44 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 18 |
| 906 | 74.46 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 2 | 20 |
| 912 | 74.47 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 924 | 74.47 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 22 |
| 942 | 74.47 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 11 | 23 |