BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0562000 Os03g0562000|AK067072
         (171 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0562000  Conserved hypothetical protein                      358   1e-99
Os08g0333500                                                      110   4e-25
Os11g0625400                                                       97   4e-21
Os01g0541000  Transcriptional factor B3 family protein             81   4e-16
Os11g0242900                                                       65   4e-11

>Os03g0562000 Conserved hypothetical protein
          Length = 171

 Score =  358 bits (919), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MDPNGSAFEERAPFRDITNISSDARAGSTTSTKLQRNTKRTLELCFCAKNVDPTADLKKY 60
           MDPNGSAFEERAPFRDITNISSDARAGSTTSTKLQRNTKRTLELCFCAKNVDPTADLKKY
Sbjct: 1   MDPNGSAFEERAPFRDITNISSDARAGSTTSTKLQRNTKRTLELCFCAKNVDPTADLKKY 60

Query: 61  IEDLECLDRSSKFYAVAVNNTFMKQDRVYFTKEFSKDYLKPLMDGKETISIGVQMAGGVS 120
           IEDLECLDRSSKFYAVAVNNTFMKQDRVYFTKEFSKDYLKPLMDGKETISIGVQMAGGVS
Sbjct: 61  IEDLECLDRSSKFYAVAVNNTFMKQDRVYFTKEFSKDYLKPLMDGKETISIGVQMAGGVS 120

Query: 121 KNMMLQMSTDDRCNLKKVWAKFATRNHIYLQSLCTFHFNKTTRLEATFDVL 171
           KNMMLQMSTDDRCNLKKVWAKFATRNHIYLQSLCTFHFNKTTRLEATFDVL
Sbjct: 121 KNMMLQMSTDDRCNLKKVWAKFATRNHIYLQSLCTFHFNKTTRLEATFDVL 171



>Os08g0333500 
          Length = 349

 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 85/157 (54%), Gaps = 30/157 (19%)

Query: 21  SSDARAGSTT----STKLQRNTKRTLE-LCFCAKNVDPTADLKKYIEDL-ECLDRSSKFY 74
           SSD+R  S T    S+     T R+ + LCFCA+N   T D+K YI  + + L RSSKFY
Sbjct: 100 SSDSRTESMTDIPSSSDNSGETTRSFDDLCFCARNTAVTPDIKNYISIIGQFLQRSSKFY 159

Query: 75  AVAVNNTFMKQDRVYFTKEFSKDYLKPLMDGKETISIGVQMAGGVSKNMMLQMSTDDRCN 134
            V +NNTFMKQDR+                        V+ AG  S  M+L  S+DDRCN
Sbjct: 160 IVTMNNTFMKQDRL------------------------VEAAGSDSVTMLLHKSSDDRCN 195

Query: 135 LKKVWAKFATRNHIYLQSLCTFHFNKTTRLEATFDVL 171
           LK+ WA FA  N I+L S+C FHF K   ++ T D L
Sbjct: 196 LKRGWATFAATNAIHLHSVCIFHFYKAPNVKITIDAL 232



>Os11g0625400 
          Length = 215

 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 77/152 (50%), Gaps = 37/152 (24%)

Query: 21  SSDARAGSTTSTKLQRNTKRTLELCFCAKNVDPTADLKKYIEDL-ECLDRSSKFYAVAVN 79
           SSD+R  S T            ++   + N   T D+K YI  + + L RSSKFY V +N
Sbjct: 100 SSDSRTESMT------------DIPSSSDNSAVTPDIKNYISIIGQFLQRSSKFYIVTMN 147

Query: 80  NTFMKQDRVYFTKEFSKDYLKPLMDGKETISIGVQMAGGVSKNMMLQMSTDDRCNLKKVW 139
           NTFMKQDR+                        V+ AG  S  M+L  S+DDRCNLK+ W
Sbjct: 148 NTFMKQDRL------------------------VEAAGSDSVTMLLHKSSDDRCNLKRGW 183

Query: 140 AKFATRNHIYLQSLCTFHFNKTTRLEATFDVL 171
           A FA  N I+L S+C FHF K   ++ T DVL
Sbjct: 184 ATFAATNAIHLHSVCIFHFYKAPNVKITIDVL 215



>Os01g0541000 Transcriptional factor B3 family protein
          Length = 168

 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 11/112 (9%)

Query: 2   DPNGSAFEERAPFRDITNISSDARA---------GSTTSTKLQRNTKRTL-ELCFCAKNV 51
           +P   +F   +P    T I+S  +          G++TS     N +RT+ E+CFC K++
Sbjct: 55  EPTRQSFRTSSPQGKATTITSPIQCCIKGKLKHDGTSTSASTHGNNRRTISEMCFCTKDI 114

Query: 52  DPTADLKKYIEDLEC-LDRSSKFYAVAVNNTFMKQDRVYFTKEFSKDYLKPL 102
             +A++K YI+D+   L  S KFY  A+N TFMK+ RVY  KEFSK Y+ PL
Sbjct: 115 RLSAEVKNYIKDIAPFLQPSDKFYVTAINATFMKEGRVYLVKEFSKKYIAPL 166



>Os11g0242900 
          Length = 298

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 30/118 (25%)

Query: 21  SSDARAGSTT----STKLQRNTKRTLE-LCFCAKNVDPTADLKKYIEDL-ECLDRSSKFY 74
           SSD+R  S T    S+     T R+ + LCFCA+N   T D+K YI  + + L RSSKFY
Sbjct: 160 SSDSRTESMTDIPSSSDNSGETTRSFDDLCFCARNTAVTPDIKNYISIIGQFLQRSSKFY 219

Query: 75  AVAVNNTFMKQDRVYFTKEFSKDYLKPLMDGKETISIGVQMAGGVSKNMMLQMSTDDR 132
            V +NNTFMKQDR+                        V+ AG  S  M+L  S+DD 
Sbjct: 220 IVTMNNTFMKQDRL------------------------VEAAGSDSVTMLLHKSSDDH 253



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,260,249
Number of extensions: 183248
Number of successful extensions: 338
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 5
Length of query: 171
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 77
Effective length of database: 12,127,685
Effective search space: 933831745
Effective search space used: 933831745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)