Os03g0562000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0562000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.78 | 0.328 | 10.5 | -1.73 | 0.252 | -1.15 | 0.977 | 2.36 | -0.0213 | 5.13 | 48.56 | 1066 | -- | -- |
| 53.24 | 0.34 | 10.4 | -1.25 | 0.248 | -1.14 | 0.965 | -- | 0.11 | 5.77 | 70.76 | 1066 | -- | -- |
| 51.03 | 0.333 | 10.5 | -1.7 | 0.328 | -1.17 | -- | 2.39 | -0.0152 | 5.44 | 54.18 | 920 | -- | -- |
| 55.05 | 0.346 | 10.4 | -1.27 | 0.255 | -1.12 | -- | -- | 0.0892 | 4.52 | 62.91 | 1166 | -- | -- |
| 54.33 | 0.343 | 10.5 | -1.74 | -- | -1.19 | -- | 2.19 | -0.0202 | -- | 65.42 | 1146 | -- | -- |
| 73.19 | 0.401 | 10.4 | -0.913 | 0.342 | -- | 0.503 | -- | 0.294 | 3.6 | -- | -- | -- | -- |
| 73.79 | 0.402 | 10.4 | -0.921 | 0.344 | -- | -- | -- | 0.292 | 3.01 | -- | -- | -- | -- |
| 57.92 | 0.354 | 10.4 | -1.26 | -- | -1.16 | -- | -- | 0.0948 | -- | 107.8 | 1184 | -- | -- |
| 90.6 | 0.443 | 10.4 | -- | 0.265 | -0.555 | -- | -- | 0.316 | 3.55 | 59.29 | 1158 | -- | -- |
| 80.58 | 0.419 | 10.4 | -0.907 | -- | -- | -- | -- | 0.301 | -- | -- | -- | -- | -- |
| 96.16 | 0.459 | 10.3 | -- | 0.326 | -- | -- | -- | 0.394 | 2.99 | -- | -- | -- | -- |
| 94.36 | 0.452 | 10.4 | -- | -- | -0.642 | -- | -- | 0.309 | -- | 81.64 | 1150 | -- | -- |
| 102.26 | 0.472 | 10.3 | -- | -- | -- | -- | -- | 0.401 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 22 |
| 4 | 49.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 9 | 49.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 21 | 49.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 26 | 49.55 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 29 | 49.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 32 | 49.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 48 | 49.80 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 51 | 49.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 70 | 49.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 73 | 49.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 100 | 50.18 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 136 | 50.42 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 334 | 50.75 | temperature | 10 | 1440 | > th | dose dependent | sin | 2 | NA |
| 364 | 50.78 | temperature | 10 | 720 | > th | dose dependent | sin | 13 | NA |
| 375 | 50.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 16 |
| 424 | 50.82 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 13 |
| 583 | 50.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 587 | 50.98 | temperature | 30 | 720 | < th | dose dependent | sin | 14 | NA |
| 625 | 51.03 | temperature | 10 | 1440 | > th | dose dependent | sin | 16 | NA |
| 684 | 51.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 701 | 51.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 10 |
| 733 | 51.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 8 |
| 763 | 51.14 | temperature | 30 | 1440 | < th | dose dependent | sin | 3 | NA |
| 815 | 51.18 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 10 |
| 832 | 51.19 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 13 |
| 865 | 51.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 891 | 51.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 2 |