BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0561000 Os03g0561000|Os03g0561000
(244 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0561000 504 e-143
Os06g0337000 107 1e-23
Os02g0834400 85 5e-17
Os01g0160400 81 7e-16
Os09g0445200 78 5e-15
>Os03g0561000
Length = 244
Score = 504 bits (1297), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/244 (100%), Positives = 244/244 (100%)
Query: 1 MKRDRSPTLAKVSSSKKPPVTPASSSSNLAGDKAQVDLMQDHGKRLEAALTKQIAELHSA 60
MKRDRSPTLAKVSSSKKPPVTPASSSSNLAGDKAQVDLMQDHGKRLEAALTKQIAELHSA
Sbjct: 1 MKRDRSPTLAKVSSSKKPPVTPASSSSNLAGDKAQVDLMQDHGKRLEAALTKQIAELHSA 60
Query: 61 EPRLLLMSVRSIDDEPPRLNLPSDGFIMVRHAAAVHRDVYDLQKLLKQEPLDNRMIVDAI 120
EPRLLLMSVRSIDDEPPRLNLPSDGFIMVRHAAAVHRDVYDLQKLLKQEPLDNRMIVDAI
Sbjct: 61 EPRLLLMSVRSIDDEPPRLNLPSDGFIMVRHAAAVHRDVYDLQKLLKQEPLDNRMIVDAI 120
Query: 121 GVITLSWKEHYVEPRPEDLVKLMSDLEDLVGFLSGNSGPPSFEELMRYESMCIDASRDLK 180
GVITLSWKEHYVEPRPEDLVKLMSDLEDLVGFLSGNSGPPSFEELMRYESMCIDASRDLK
Sbjct: 121 GVITLSWKEHYVEPRPEDLVKLMSDLEDLVGFLSGNSGPPSFEELMRYESMCIDASRDLK 180
Query: 181 IFAEDKVKMLTFGKHLDACHADWQTKAEYYENKAKEARAASAEYHQLMKCNEEMIINHPA 240
IFAEDKVKMLTFGKHLDACHADWQTKAEYYENKAKEARAASAEYHQLMKCNEEMIINHPA
Sbjct: 181 IFAEDKVKMLTFGKHLDACHADWQTKAEYYENKAKEARAASAEYHQLMKCNEEMIINHPA 240
Query: 241 AVDS 244
AVDS
Sbjct: 241 AVDS 244
>Os06g0337000
Length = 212
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 70/128 (54%), Gaps = 47/128 (36%)
Query: 25 SSSNLAGDKAQVDLMQDHGKRLEAALTKQIAELHSAEPRLLLMSVRSIDDEPPRLNLPSD 84
S NLA DKA+VDLMQ+ GKRLEAALTKQ+ E
Sbjct: 40 SQGNLANDKARVDLMQNRGKRLEAALTKQLDE---------------------------- 71
Query: 85 GFIMVRHAAAVHRDVYDLQKLLKQEPLDNRMIVDAIGVITLSWKEHYVEPRPEDLVKLMS 144
KLLKQEPL+NR+IVDAIGVIT SWKEHY +P PEDLVKLMS
Sbjct: 72 -------------------KLLKQEPLNNRLIVDAIGVITSSWKEHYAKPCPEDLVKLMS 112
Query: 145 DLEDLVGF 152
D+ DL +
Sbjct: 113 DVGDLAEY 120
>Os02g0834400
Length = 474
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 106/244 (43%), Gaps = 32/244 (13%)
Query: 19 PVTPASSSSNLAGDKAQVDLMQDHGKRLEAAL---------TKQIAELHSAEPRLLLMSV 69
PV PA+ +++ G Q + G + A ++ +AE + L L SV
Sbjct: 176 PVMPAADAASAPGPSTQKHQEETSGNPSDTACQMNELMEKTSRYLAEFGTCGRYLQLNSV 235
Query: 70 RSIDDEPPRLNLPSDGFIMVRHAAAVHRDVYDLQKLLKQEPLDNRMIVDAIGVITLSWKE 129
S DE P L LP R+A V D++ +Q L ++PL+ ++ IG T +W+
Sbjct: 236 SSATDELPTLELPKSTLTERRNAHMVEEDLFSIQDCLMEKPLNKEGTIEYIGAATAAWEN 295
Query: 130 HYVEPRPEDLVKLMSDLEDLVGFLSGNSGPPSFE-------------ELMRYESMCIDAS 176
Y RP DL KLMS L LV L G P +FE L + ES C D
Sbjct: 296 SYELGRPADLEKLMSYLGALVQRLKGEL-PVTFEGRTLAAHEGEARSSLAKLESACSDVL 354
Query: 177 RDLKIF---AEDKVKMLTFGKHLDACHADWQTKAEYYENKAKEARAASAEYHQLMKCNEE 233
DL + ED L K A W+ +AE +E KAK+AR + HQ ++ E
Sbjct: 355 PDLDLLKSGCEDVAADLQKSKQAGAT---WKKEAEEHELKAKDAR---EKEHQCLESEEA 408
Query: 234 MIIN 237
N
Sbjct: 409 AAKN 412
>Os01g0160400
Length = 520
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 101/229 (44%), Gaps = 30/229 (13%)
Query: 25 SSSNLAGDKAQVDLMQDHGKRLEAALTKQIAELHSAEPRLLLMSVRSIDDEPPRLNLPSD 84
+SSN G Q++ + + R +AE + L L SV S DE P L LP
Sbjct: 244 TSSNPFGTARQMNELMEKTSRY-------LAEFGTGGRYLQLNSVSSATDELPTLELPKS 296
Query: 85 GFIMVRHAAAVHRDVYDLQKLLKQEPLDNRMIVDAIGVITLSWKEHYVEPRPEDLVKLMS 144
R+A V D++ +Q L ++PL+ ++ IG T +W+ Y RP DL KLMS
Sbjct: 297 TPTERRNARMVEEDLFSIQDCLMEKPLNKEGTIEYIGAATAAWENSYEIGRPTDLEKLMS 356
Query: 145 DLEDLVGFLSGNSGPPSFE-------------ELMRYESMCIDASRDLKIFA---EDKVK 188
L LV L G P +FE L + ES C D DL + ED
Sbjct: 357 YLGALVQRLKGEL-PVTFEGRTLAAHEGEARSSLAKLESACSDVLPDLDLLKSGHEDVAA 415
Query: 189 MLTFGKHLDACHADWQTKAEYYENKAKEARAASAEYHQLMKCNEEMIIN 237
L K A W+ +AE +E KAK+AR + HQ ++ E N
Sbjct: 416 DLQKSKQAGAT---WKKEAEEHELKAKDAR---EKEHQCLESEEAAAKN 458
>Os09g0445200
Length = 601
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 91/204 (44%), Gaps = 23/204 (11%)
Query: 51 TKQIAELHSAEPRLLLMSVRSIDDEPPRLNLPSDGFIMVRHAAAVHRDVYDLQKLLKQEP 110
++ +AE + L L SV S DE P L LP I R+A V D+ +Q L ++P
Sbjct: 332 SRYLAEFGTGGRYLQLNSVSSATDELPTLELPKSTPIERRNARMVEEDLLSIQDCLMEKP 391
Query: 111 LDNRMIVDAIGVITLSWKEHYVEPRPEDLVKLMSDLEDLVGFLSGNSGPPSFE------- 163
L+ ++ IG T +W+ Y RP DL KLMS L LV L G P +FE
Sbjct: 392 LNKEGTIEYIGAATAAWENSYELGRPADLEKLMSYLGALVQHLKGEL-PVTFEGRTLAAH 450
Query: 164 ------ELMRYESMCIDA---SRDLKIFAEDKVKMLTFGKHLDACHADWQTKAEYYENKA 214
L + ES C D LK ED L K A W+ +AE +E KA
Sbjct: 451 EGEARSSLAKLESACSDVLLDLDLLKSGREDVAADLQKSKQ---ARATWKKEAEEHELKA 507
Query: 215 KEARAASAEYHQLMKCNEEMIINH 238
K+AR + HQ ++ E N
Sbjct: 508 KDAR---EKEHQCLESEEAAAKNR 528
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.130 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,844,385
Number of extensions: 363080
Number of successful extensions: 1274
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1272
Number of HSP's successfully gapped: 5
Length of query: 244
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 146
Effective length of database: 11,918,829
Effective search space: 1740149034
Effective search space used: 1740149034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)