Os03g0561000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0561000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.52 | 0.501 | 11.4 | -1.21 | 2.79 | 0.634 | 1.62 | -2.16 | 0.235 | 7.48 | 10 | 1459 | -- | -- |
| 121.13 | 0.513 | 11.4 | -0.908 | 2.76 | 0.662 | 1.54 | -- | 0.274 | 7.46 | 10 | 1467 | -- | -- |
| 120.37 | 0.511 | 11.4 | -1.19 | 2.83 | 0.636 | -- | -2.2 | 0.232 | 7.51 | 10 | 1398 | -- | -- |
| 127.55 | 0.526 | 11.4 | -0.83 | 2.8 | 0.594 | -- | -- | 0.363 | 7.55 | 10.01 | 1421 | -- | -- |
| 475.28 | 1.02 | 11.4 | -0.588 | -- | 0.848 | -- | -0.0223 | 0.541 | -- | 2.398 | 1512 | -- | -- |
| 130.17 | 0.535 | 11.3 | -0.688 | 2.8 | -- | 1.59 | -- | 0.544 | 7.49 | -- | -- | -- | -- |
| 137.13 | 0.548 | 11.3 | -0.651 | 2.8 | -- | -- | -- | 0.542 | 7.49 | -- | -- | -- | -- |
| 469.74 | 1.01 | 11.4 | -0.62 | -- | 0.879 | -- | -- | 0.565 | -- | 1.117 | 1502 | -- | -- |
| 144.26 | 0.559 | 11.3 | -- | 2.8 | 0.394 | -- | -- | 0.48 | 7.42 | 18.64 | 1525 | -- | -- |
| 556.09 | 1.1 | 11.4 | -0.609 | -- | -- | -- | -- | 0.586 | -- | -- | -- | -- | -- |
| 148.31 | 0.57 | 11.3 | -- | 2.79 | -- | -- | -- | 0.614 | 7.51 | -- | -- | -- | -- |
| 479.88 | 1.02 | 11.4 | -- | -- | 0.877 | -- | -- | 0.634 | -- | 1.117 | 1502 | -- | -- |
| 565.86 | 1.11 | 11.4 | -- | -- | -- | -- | -- | 0.653 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.05 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 3 | 107.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 6 | 108.06 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 10 | 108.14 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 40 | 109.09 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 42 | 109.16 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 15 |
| 49 | 109.24 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 72 | 109.68 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 76 | 109.75 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 84 | 109.92 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 89 | 110.04 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 90 | 110.11 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 94 | 110.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 95 | 110.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 105 | 110.46 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 113 | 110.67 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 130 | 110.82 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 157 | 111.08 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 3 |
| 175 | 111.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 179 | 111.19 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 189 | 111.33 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 244 | 111.78 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 327 | 112.29 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 349 | 112.39 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 15 |
| 361 | 112.46 | radiation | 10 | 1440 | > th | dose independent | sin | 21 | NA |
| 505 | 113.46 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 569 | 113.64 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 584 | 113.69 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 706 | 113.99 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 716 | 114.06 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 727 | 114.12 | humidity | 80 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 755 | 114.26 | humidity | 80 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 771 | 114.30 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 775 | 114.30 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 778 | 114.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 788 | 114.32 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 951 | 114.78 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 13 |
| 954 | 114.79 | humidity | 70 | 720 | > th | dose dependent | rect. | 6 | 20 |
| 955 | 114.80 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |