BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0414100 Os03g0414100|AK100586
         (361 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0414100  Conserved hypothetical protein                      511   e-145

>Os03g0414100 Conserved hypothetical protein
          Length = 361

 Score =  511 bits (1315), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 276/361 (76%), Positives = 276/361 (76%)

Query: 1   MVVPIXXXXXXXXXXXXXXXXXXXEMLPAAVTREAVGASMAWLLRHLWAWLVAARGVAVE 60
           MVVPI                   EMLPAAVTREAVGASMAWLLRHLWAWLVAARGVAVE
Sbjct: 1   MVVPIANLSAVVAGAAHAAKAFAVEMLPAAVTREAVGASMAWLLRHLWAWLVAARGVAVE 60

Query: 61  NLPXXXXXXXXXXXXXXXXXXPWLQVAAEFLHGLYGWMLAAVAVAVESLPGVAKSTVEAS 120
           NLP                  PWLQVAAEFLHGLYGWMLAAVAVAVESLPGVAKSTVEAS
Sbjct: 61  NLPVAAAVAKGAAGSAMEASAPWLQVAAEFLHGLYGWMLAAVAVAVESLPGVAKSTVEAS 120

Query: 121 QPWLAAAAELLQVIYGWLVAAIAVAVENLPGVAKNTVEYTVEASQPWLAVAAKLLWGLYG 180
           QPWLAAAAELLQVIYGWLVAAIAVAVENLPGVAKNTVEYTVEASQPWLAVAAKLLWGLYG
Sbjct: 121 QPWLAAAAELLQVIYGWLVAAIAVAVENLPGVAKNTVEYTVEASQPWLAVAAKLLWGLYG 180

Query: 181 WLVAVSAVAVEMLPDXXXXXXXXXXXXSQPWLAMASKLLQAHDLCGRLVTAGDKVVENLP 240
           WLVAVSAVAVEMLPD            SQPWLAMASKLLQAHDLCGRLVTAGDKVVENLP
Sbjct: 181 WLVAVSAVAVEMLPDAAKNAAGSAAEASQPWLAMASKLLQAHDLCGRLVTAGDKVVENLP 240

Query: 241 EXXXXXXXXXXHCSADATPMPTHGHXXXXXXXXXXXXXXXXXXXXXXXXXXTCRTMKGPG 300
           E          HCSADATPMPTHGH                          TCRTMKGPG
Sbjct: 241 EAAAAAMGGGAHCSADATPMPTHGHGGVAVYALLAIALLAVAFLGGAVCALTCRTMKGPG 300

Query: 301 LGGARVPRAVFRASPRRYYAAVRTARKARRSASGIGWKNLVAAMSLAVAACIVYLGAKML 360
           LGGARVPRAVFRASPRRYYAAVRTARKARRSASGIGWKNLVAAMSLAVAACIVYLGAKML
Sbjct: 301 LGGARVPRAVFRASPRRYYAAVRTARKARRSASGIGWKNLVAAMSLAVAACIVYLGAKML 360

Query: 361 H 361
           H
Sbjct: 361 H 361



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.131    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,925,302
Number of extensions: 267638
Number of successful extensions: 858
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 842
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 259
Effective length of database: 11,709,973
Effective search space: 3032883007
Effective search space used: 3032883007
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)