Os03g0414100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0414100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.38 | 0.496 | 7.02 | 0.819 | 0.555 | 1.17 | -1.93 | 0.248 | 0.00582 | 3.33 | 68.94 | 726 | -- | -- |
| 111.4 | 0.492 | 7.02 | 0.847 | 0.546 | 1.2 | -1.93 | -- | 0.00525 | 3.21 | 67.02 | 726 | -- | -- |
| 119.82 | 0.51 | 6.99 | 0.75 | 0.929 | 1.02 | -- | 1.04 | 0.0114 | 4.82 | 68.78 | 1076 | -- | -- |
| 121.08 | 0.512 | 7 | 0.876 | 0.94 | 1.02 | -- | -- | 0.0275 | 4.77 | 66.83 | 1064 | -- | -- |
| 130.48 | 0.532 | 7.03 | 0.807 | -- | 1.19 | -- | -0.215 | 0.00966 | -- | 70.04 | 501 | -- | -- |
| 134.66 | 0.544 | 7.02 | 0.875 | 0.942 | -- | -1.21 | -- | -0.0801 | 5.6 | -- | -- | -- | -- |
| 137.38 | 0.549 | 7.01 | 0.873 | 0.945 | -- | -- | -- | -0.0737 | 6.08 | -- | -- | -- | -- |
| 130.51 | 0.532 | 7.01 | 0.862 | -- | 1.22 | -- | -- | 0.039 | -- | 68.76 | 515 | -- | -- |
| 140.21 | 0.551 | 7 | -- | 0.972 | 1.17 | -- | -- | -0.037 | 4.77 | 73.98 | 1080 | -- | -- |
| 183.68 | 0.633 | 7.03 | 0.9 | -- | -- | -- | -- | -0.0525 | -- | -- | -- | -- | -- |
| 157.47 | 0.587 | 7.03 | -- | 0.958 | -- | -- | -- | -0.171 | 6.03 | -- | -- | -- | -- |
| 149.54 | 0.57 | 7.03 | -- | -- | 1.22 | -- | -- | -0.046 | -- | 72 | 497 | -- | -- |
| 205.05 | 0.668 | 7.05 | -- | -- | -- | -- | -- | -0.152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.16 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 3 | 107.54 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 21 |
| 11 | 108.19 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 21 |
| 15 | 108.64 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 15 |
| 19 | 109.22 | radiation | 1 | 720 | > th | dose independent | sin | 13 | NA |
| 25 | 109.56 | humidity | 80 | 720 | < th | dose independent | rect. | 2 | 17 |
| 30 | 109.68 | humidity | 80 | 720 | < th | dose independent | rect. | 7 | 12 |
| 33 | 109.77 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 46 | 109.86 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 61 | 110.18 | radiation | 1 | 720 | < th | dose dependent | sin | 1 | NA |
| 62 | 110.25 | humidity | 70 | 720 | > th | dose dependent | rect. | 2 | 20 |
| 63 | 110.27 | humidity | 80 | 720 | < th | dose independent | rect. | 21 | 22 |
| 65 | 110.28 | humidity | 70 | 720 | > th | dose dependent | rect. | 1 | 22 |
| 69 | 110.32 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 22 |
| 82 | 110.55 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 15 |
| 96 | 110.74 | humidity | 80 | 720 | < th | dose independent | sin | 23 | NA |
| 136 | 111.04 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 21 |
| 144 | 111.09 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 22 |
| 158 | 111.16 | humidity | 80 | 720 | < th | dose independent | rect. | 15 | 4 |
| 162 | 111.20 | humidity | 80 | 720 | > th | dose independent | rect. | 2 | 18 |
| 201 | 111.41 | humidity | 70 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 211 | 111.46 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 213 | 111.49 | humidity | 70 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 216 | 111.51 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 9 |
| 219 | 111.52 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 8 |
| 229 | 111.59 | radiation | 1 | 720 | < th | dose independent | sin | 1 | NA |
| 241 | 111.65 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 16 |
| 243 | 111.67 | humidity | 50 | 720 | > th | dose dependent | rect. | 19 | 3 |
| 257 | 111.68 | humidity | 70 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 264 | 111.72 | humidity | 70 | 720 | > th | dose dependent | rect. | 3 | 14 |
| 273 | 111.79 | radiation | 1 | 720 | < th | dose dependent | sin | 15 | NA |
| 279 | 111.84 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 23 |
| 312 | 112.03 | humidity | 80 | 720 | > th | dose independent | rect. | 2 | 15 |
| 332 | 112.12 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 23 |
| 352 | 112.21 | humidity | 80 | 720 | < th | dose independent | no | NA | NA |
| 397 | 112.31 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 23 |
| 401 | 112.33 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 404 | 112.33 | radiation | 1 | 720 | > th | dose independent | rect. | 4 | 15 |
| 468 | 112.37 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 480 | 112.42 | radiation | 1 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 481 | 112.43 | humidity | 80 | 720 | > th | dose independent | rect. | 21 | 23 |
| 496 | 112.48 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 508 | 112.54 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 20 |
| 513 | 112.57 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 22 |
| 529 | 112.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 537 | 112.67 | radiation | 1 | 720 | > th | dose independent | sin | 2 | NA |
| 546 | 112.70 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 567 | 112.76 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 600 | 112.86 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 23 |
| 603 | 112.87 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 675 | 113.10 | humidity | 90 | 720 | < th | dose dependent | rect. | 14 | 21 |
| 735 | 113.31 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 821 | 113.59 | humidity | 70 | 90 | > th | dose dependent | rect. | 19 | 16 |
| 873 | 113.73 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 23 |
| 878 | 113.74 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 23 |
| 879 | 113.75 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 885 | 113.76 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 21 |
| 887 | 113.76 | radiation | 10 | 720 | < th | dose dependent | rect. | 10 | 13 |
| 909 | 113.84 | humidity | 70 | 720 | > th | dose dependent | sin | 2 | NA |
| 911 | 113.84 | radiation | 40 | 720 | < th | dose dependent | rect. | 13 | 18 |
| 927 | 113.89 | humidity | 50 | 90 | > th | dose dependent | sin | 11 | NA |
| 938 | 113.92 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 949 | 113.95 | radiation | 1 | 720 | < th | dose independent | rect. | 18 | 23 |