BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0409100 Os03g0409100|AK120517
         (155 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0409100  Conserved hypothetical protein                      239   7e-64

>Os03g0409100 Conserved hypothetical protein
          Length = 155

 Score =  239 bits (609), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 124/155 (80%), Positives = 124/155 (80%)

Query: 1   MALKTLQVPSSFARPINRSFIGXXXXXXXXXQFSLRPKPASARLAASVAGERRLECRGGS 60
           MALKTLQVPSSFARPINRSFIG         QFSLRPKPASARLAASVAGERRLECRGGS
Sbjct: 1   MALKTLQVPSSFARPINRSFIGSSSSSSSSSQFSLRPKPASARLAASVAGERRLECRGGS 60

Query: 61  SLHGCVDEGXXXXXXXXQEQAVEIPIVLFPSVVFPGATVQLQAFEFRYRIMVHTLLQEGV 120
           SLHGCVDEG        QEQAVEIPIVLFPSVVFPGATVQLQAFEFRYRIMVHTLLQEGV
Sbjct: 61  SLHGCVDEGAAAASRRRQEQAVEIPIVLFPSVVFPGATVQLQAFEFRYRIMVHTLLQEGV 120

Query: 121 TRFXXXXXXXXXXXXXXRPRWPPLLQRQVETTTIE 155
           TRF              RPRWPPLLQRQVETTTIE
Sbjct: 121 TRFGVVYSGGGVGGDQGRPRWPPLLQRQVETTTIE 155



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,992,743
Number of extensions: 119972
Number of successful extensions: 349
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 63
Effective length of database: 12,232,113
Effective search space: 770623119
Effective search space used: 770623119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 151 (62.8 bits)