BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0385100 Os03g0385100|Os03g0385100
         (179 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0385100                                                      368   e-102
Os03g0385250                                                      256   7e-69

>Os03g0385100 
          Length = 179

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/179 (100%), Positives = 179/179 (100%)

Query: 1   MSLEGRHRVEERGDAINKRQAKKARKTSADLLLLDRLGYQDESEDVGSSTWTAPMATSRG 60
           MSLEGRHRVEERGDAINKRQAKKARKTSADLLLLDRLGYQDESEDVGSSTWTAPMATSRG
Sbjct: 1   MSLEGRHRVEERGDAINKRQAKKARKTSADLLLLDRLGYQDESEDVGSSTWTAPMATSRG 60

Query: 61  VRFQLSLRPKETPGVSRLLFKAVVPADILTSYDPSNTDSPFIRQSSALFVLIVASSNDKA 120
           VRFQLSLRPKETPGVSRLLFKAVVPADILTSYDPSNTDSPFIRQSSALFVLIVASSNDKA
Sbjct: 61  VRFQLSLRPKETPGVSRLLFKAVVPADILTSYDPSNTDSPFIRQSSALFVLIVASSNDKA 120

Query: 121 ILLQALCAGGIDYFVMDHLDHSSLAMTRFPDMPPRVWGIRDMGLMRRDGSSCSYVVAWC 179
           ILLQALCAGGIDYFVMDHLDHSSLAMTRFPDMPPRVWGIRDMGLMRRDGSSCSYVVAWC
Sbjct: 121 ILLQALCAGGIDYFVMDHLDHSSLAMTRFPDMPPRVWGIRDMGLMRRDGSSCSYVVAWC 179



>Os03g0385250 
          Length = 149

 Score =  256 bits (654), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 127/150 (84%), Positives = 135/150 (90%), Gaps = 1/150 (0%)

Query: 1   MSLEGRHRVEERGDAINKRQAKKARKTSADLLLLDRLGYQDESEDVGSSTWTAPMATSRG 60
           MSLEG+HRVEERGD I+KRQAKKARKTSADLLLLD +GYQDES+D G STWTAPM TSRG
Sbjct: 1   MSLEGKHRVEERGDEIDKRQAKKARKTSADLLLLDHIGYQDESQDDGGSTWTAPMVTSRG 60

Query: 61  VRFQLSLRPKETPGVSRLLFKAVVPADILTSYDPSNTDSPFIRQSSALFVLIVASSNDKA 120
           VRFQLSLRPKE P VSR+LFKAVVPADILTSYDP+NT +PF+R  SA FVLIV SSNDKA
Sbjct: 61  VRFQLSLRPKEPPDVSRMLFKAVVPADILTSYDPNNTANPFLR-PSARFVLIVISSNDKA 119

Query: 121 ILLQALCAGGIDYFVMDHLDHSSLAMTRFP 150
           ILLQALCAGGIDYFVMDHLDHS  AMTR P
Sbjct: 120 ILLQALCAGGIDYFVMDHLDHSPPAMTRLP 149



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,242,627
Number of extensions: 233144
Number of successful extensions: 658
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 657
Number of HSP's successfully gapped: 2
Length of query: 179
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 85
Effective length of database: 12,127,685
Effective search space: 1030853225
Effective search space used: 1030853225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)