BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0369100 Os03g0369100|AK111061
         (114 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0369100  Plant lipid transfer/seed storage/trypsin-alph...   234   1e-62
Os01g0800600                                                      120   3e-28
Os11g0484700                                                       78   1e-15

>Os03g0369100 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
           domain containing protein
          Length = 114

 Score =  234 bits (596), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MARQQLLGLFLVLAIMVAVVWGDPSGGCDQDRQDMIRECKKYEGWPAEPKIEPSEACCAV 60
           MARQQLLGLFLVLAIMVAVVWGDPSGGCDQDRQDMIRECKKYEGWPAEPKIEPSEACCAV
Sbjct: 1   MARQQLLGLFLVLAIMVAVVWGDPSGGCDQDRQDMIRECKKYEGWPAEPKIEPSEACCAV 60

Query: 61  WQRANIPCLCAGVTKEKEKVWCMEKVVYVAKFCKKPFQPGYQCGSYTVPSSLGQ 114
           WQRANIPCLCAGVTKEKEKVWCMEKVVYVAKFCKKPFQPGYQCGSYTVPSSLGQ
Sbjct: 61  WQRANIPCLCAGVTKEKEKVWCMEKVVYVAKFCKKPFQPGYQCGSYTVPSSLGQ 114



>Os01g0800600 
          Length = 108

 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 66/89 (74%)

Query: 25  SGGCDQDRQDMIRECKKYEGWPAEPKIEPSEACCAVWQRANIPCLCAGVTKEKEKVWCME 84
           SG C  D QD++  C+ Y  +PA+PKI+PS+ACCA  QRAN+PC+C  V  E E++ CM+
Sbjct: 20  SGDCSSDVQDLMANCQDYVMFPADPKIDPSQACCAAVQRANMPCVCNKVIPEVEQLICMD 79

Query: 85  KVVYVAKFCKKPFQPGYQCGSYTVPSSLG 113
           KVVYV  FCKKPFQPG  CGSY VP+SL 
Sbjct: 80  KVVYVVAFCKKPFQPGSNCGSYRVPASLA 108



>Os11g0484700 
          Length = 120

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 49/81 (60%)

Query: 28  CDQDRQDMIRECKKYEGWPAEPKIEPSEACCAVWQRANIPCLCAGVTKEKEKVWCMEKVV 87
           C++D   ++  C+ Y  +PAE K  PS ACC   +R ++ CLC  VT E E+  CM+K V
Sbjct: 40  CEKDLDLLMGSCEGYLRFPAEAKAAPSRACCGAVRRVDVGCLCGMVTPEVEQYVCMDKAV 99

Query: 88  YVAKFCKKPFQPGYQCGSYTV 108
           YVA +C +P  PG  CGS  V
Sbjct: 100 YVAAYCHRPLLPGSYCGSKLV 120



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,442,148
Number of extensions: 177047
Number of successful extensions: 353
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 3
Length of query: 114
Length of database: 17,035,801
Length adjustment: 81
Effective length of query: 33
Effective length of database: 12,806,467
Effective search space: 422613411
Effective search space used: 422613411
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)