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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0369100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.0151) R2 : 0.00226
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0323 (0.0318) R2dN8 : 0.00292 R2N8 : 0.00226
σ : 0.285
deviance : 37.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.93 0.278 3.04 0.899 0.0945 -0.551 0.261 4.77 0.0292 10.7 28.98 3009 -- --
36.15 0.28 3.15 0.024 0.107 -0.0438 0.214 -- -0.0384 10.2 33.9 1918 -- --
35.13 0.276 3.05 0.886 0.1 -0.605 -- 5.19 0.0221 9.5 29.05 3258 -- --
36.26 0.28 3.15 0.0291 0.102 -0.0553 -- -- -0.0405 9.05 33.77 1080 -- --
35.71 0.278 3.05 0.909 -- -0.612 -- 5.19 0.0275 -- 28.98 3218 -- --
36.25 0.282 3.15 0.0144 0.111 -- 0.227 -- -0.0303 10.1 -- -- -- --
36.42 0.283 3.15 0.0224 0.114 -- -- -- -0.0304 9.3 -- -- -- --
36.93 0.283 3.15 0.0348 -- -0.0722 -- -- -0.0425 -- 33.41 1058 -- --
36.28 0.281 3.15 -- 0.11 -0.0577 -- -- -0.0432 9.04 33.59 1059 -- --
37.18 0.285 3.15 0.0218 -- -- -- -- -0.0299 -- -- -- -- --
36.43 0.282 3.15 -- 0.114 -- -- -- -0.0329 9.28 -- -- -- --
36.97 0.283 3.15 -- -- -0.068 -- -- -0.0427 -- 33.45 1051 -- --
37.19 0.285 3.15 -- -- -- -- -- -0.0323 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.75 humidity 70.0 4320 > th dose independent rect. 21 1
2 34.00 atmosphere 1000.0 30 > th dose independent rect. 21 23
6 34.16 radiation 30.0 10 < th dose dependent rect. 21 23
9 34.30 wind 9.0 1440 < th dose independent rect. 21 1
13 34.42 humidity 90.0 270 > th dose independent rect. 20 3
14 34.43 atmosphere 1000.0 720 > th dose independent rect. 21 14
15 34.45 wind 3.0 30 > th dose independent rect. 20 1
16 34.46 temperature 10.0 1440 > th dose independent rect. 21 1
19 34.46 temperature 30.0 1440 < th dose independent rect. 21 1
23 34.46 humidity 80.0 30 > th dose independent rect. 20 1
24 34.46 humidity 50.0 1440 > th dose independent rect. 21 1
30 34.46 atmosphere 995.0 1440 > th dose independent rect. 21 1
31 34.46 radiation 1.0 1440 < th dose independent rect. 21 1
51 34.46 temperature 10.0 1440 > th dose independent rect. 22 23
54 34.48 temperature 25.0 30 > th dose independent rect. 20 1
57 34.48 temperature 25.0 30 > th dose dependent rect. 20 1
58 34.48 atmosphere 1000.0 30 > th dose dependent rect. 20 1
60 34.48 radiation 30.0 1440 < th dose dependent rect. 21 1
62 34.48 radiation 40.0 14400 < th dose dependent rect. 21 1
63 34.49 atmosphere 1005.0 30 > th dose independent rect. 20 1
64 34.49 wind 1.0 30 > th dose dependent rect. 20 1
65 34.49 temperature 10.0 30 > th dose dependent rect. 20 1
68 34.49 humidity 50.0 30 > th dose dependent rect. 20 1
77 34.50 wind 5.0 30 < th dose independent rect. 20 1
80 34.50 temperature 10.0 30 > th dose independent rect. 20 1
83 34.50 temperature 30.0 30 < th dose independent rect. 20 1
84 34.50 humidity 50.0 30 > th dose independent rect. 20 1
87 34.50 humidity 90.0 30 < th dose independent rect. 20 1
88 34.50 atmosphere 995.0 30 > th dose independent rect. 20 1
90 34.50 atmosphere 1010.0 30 < th dose independent rect. 20 1
92 34.50 radiation 1.0 30 < th dose independent rect. 20 1
97 34.50 precipitation 0.1 30 < th dose independent rect. 20 1
98 34.50 temperature 10.0 30 > th dose independent rect. 21 23
99 34.50 radiation 1.0 30 < th dose dependent rect. 20 1
106 34.50 precipitation 0.1 30 < th dose dependent rect. 20 1
107 34.51 wind 9.0 30 < th dose dependent rect. 20 1
112 34.53 wind 9.0 30 < th dose independent rect. 21 23
113 34.53 humidity 80.0 270 > th dose dependent rect. 20 1
117 34.54 atmosphere 1015.0 30 < th dose dependent rect. 20 1
119 34.55 atmosphere 1000.0 30 > th dose independent rect. 3 23
125 34.56 temperature 30.0 30 < th dose dependent rect. 20 1
129 34.57 humidity 90.0 30 < th dose dependent rect. 20 1
132 34.58 radiation 10.0 30 < th dose independent rect. 21 23
133 34.58 temperature 25.0 30 > th dose dependent rect. 16 19
137 34.60 wind 9.0 720 < th dose dependent rect. 20 1
145 34.62 atmosphere 1000.0 720 > th dose independent rect. 23 10
148 34.62 humidity 90.0 270 > th dose dependent rect. 19 4
150 34.63 wind 5.0 14400 < th dose dependent rect. 11 1
179 34.67 atmosphere 1000.0 10 < th dose independent rect. 7 20
193 34.68 wind 1.0 14400 > th dose dependent rect. 11 1
202 34.70 atmosphere 1000.0 10 > th dose independent rect. 4 16
206 34.71 wind 5.0 14400 < th dose independent rect. 11 4
209 34.72 atmosphere 1000.0 10 > th dose independent rect. 8 12
211 34.72 temperature 25.0 720 > th dose dependent rect. 24 9
212 34.72 radiation 30.0 10 < th dose dependent rect. 3 23
213 34.73 humidity 80.0 4320 > th dose independent rect. 7 3
217 34.74 humidity 90.0 30 > th dose independent rect. 23 4
224 34.74 humidity 90.0 4320 < th dose dependent rect. 7 1
225 34.74 humidity 80.0 14400 < th dose dependent rect. 1 8
227 34.75 humidity 90.0 1440 > th dose independent rect. 3 1
231 34.75 wind 3.0 270 < th dose dependent rect. 20 1
234 34.76 wind 5.0 720 < th dose independent rect. 20 1
237 34.76 radiation 10.0 270 > th dose independent rect. 15 18
242 34.77 wind 5.0 14400 > th dose independent rect. 11 4
245 34.77 wind 3.0 14400 > th dose dependent rect. 10 5
248 34.77 humidity 80.0 14400 < th dose dependent rect. 20 13
264 34.80 wind 5.0 14400 < th dose independent rect. 11 1
265 34.80 wind 3.0 14400 > th dose independent rect. 10 2
275 34.81 humidity 90.0 1440 < th dose independent rect. 3 1
289 34.82 atmosphere 1010.0 10 < th dose independent rect. 8 12
296 34.83 wind 1.0 14400 > th dose independent rect. 1 2
298 34.83 humidity 80.0 4320 < th dose independent rect. 7 3
305 34.83 wind 5.0 30 < th dose independent rect. 20 12
307 34.83 temperature 30.0 1440 > th dose independent rect. 14 21
312 34.83 wind 5.0 14400 < th dose dependent rect. 10 4
316 34.83 temperature 10.0 30 > th dose dependent rect. 21 23
318 34.84 radiation 10.0 720 > th dose independent rect. 8 1
321 34.84 temperature 30.0 1440 < th dose independent rect. 14 21
326 34.84 radiation 40.0 10 < th dose dependent rect. 16 19
343 34.86 humidity 90.0 270 > th dose independent rect. 11 13
346 34.86 atmosphere 1000.0 90 > th dose independent rect. 15 20
347 34.86 atmosphere 1000.0 270 > th dose independent rect. 12 23
356 34.87 wind 3.0 10 > th dose independent rect. 16 14
367 34.87 wind 9.0 30 < th dose dependent rect. 8 12
368 34.87 radiation 30.0 10 < th dose dependent rect. 8 12
374 34.88 wind 3.0 10 > th dose independent rect. 16 12
378 34.88 wind 1.0 14400 < th dose dependent rect. 2 1
385 34.88 wind 7.0 10 < th dose dependent rect. 20 8
388 34.89 humidity 90.0 30 > th dose independent rect. 23 1
397 34.89 atmosphere 1000.0 10 > th dose independent rect. 16 14
398 34.89 atmosphere 1000.0 90 > th dose independent rect. 15 15
399 34.89 atmosphere 1010.0 10 < th dose independent rect. 4 16
401 34.89 atmosphere 1005.0 10 > th dose dependent rect. 2 2
406 34.89 humidity 90.0 270 > th dose dependent rect. 11 12
411 34.90 wind 3.0 10 < th dose independent rect. 22 6
419 34.90 wind 1.0 14400 < th dose dependent rect. 2 6
426 34.91 wind 1.0 14400 < th dose independent rect. 2 1
428 34.91 wind 5.0 4320 < th dose independent rect. 14 1
437 34.91 wind 5.0 10 < th dose independent rect. 20 8
444 34.91 humidity 50.0 720 > th dose dependent rect. 20 1
453 34.92 humidity 70.0 4320 > th dose independent rect. 21 7
455 34.92 humidity 90.0 270 < th dose independent rect. 14 10
458 34.92 wind 7.0 720 < th dose independent rect. 17 16
492 34.94 radiation 10.0 270 > th dose independent sin 12 NA
494 34.94 precipitation 0.1 1440 < th dose independent rect. 21 1
497 34.94 humidity 90.0 1440 < th dose independent rect. 2 3
508 34.94 precipitation 0.1 1440 < th dose dependent rect. 21 1
509 34.94 wind 1.0 14400 < th dose dependent rect. 4 4
512 34.95 wind 1.0 14400 < th dose independent rect. 4 4
513 34.95 atmosphere 995.0 720 > th dose independent rect. 11 10
518 34.95 atmosphere 1000.0 10 > th dose independent rect. 11 23
520 34.95 humidity 50.0 4320 > th dose dependent rect. 7 1
527 34.95 humidity 60.0 4320 > th dose dependent rect. 5 4
542 34.96 wind 3.0 10 < th dose independent rect. 23 1
545 34.96 humidity 90.0 90 < th dose independent rect. 2 2
549 34.96 wind 3.0 270 > th dose independent rect. 14 12
550 34.96 wind 5.0 30 < th dose independent rect. 8 12
553 34.96 wind 3.0 270 > th dose independent rect. 14 18
554 34.96 radiation 30.0 10 < th dose independent rect. 16 19
555 34.96 atmosphere 1000.0 10 > th dose independent rect. 24 20
575 34.96 radiation 30.0 10 < th dose dependent rect. 4 16
576 34.97 atmosphere 1000.0 720 > th dose independent rect. 8 1
581 34.97 wind 1.0 14400 < th dose independent rect. 2 6
585 34.97 atmosphere 995.0 720 > th dose independent rect. 9 14
594 34.97 precipitation 0.1 14400 > th dose dependent rect. 5 3
600 34.97 temperature 25.0 30 > th dose dependent rect. 24 11
603 34.97 atmosphere 1000.0 10 < th dose dependent rect. 7 20
608 34.98 precipitation 0.1 14400 > th dose independent rect. 5 3
638 34.99 atmosphere 1015.0 10 < th dose independent rect. 20 8
642 34.99 wind 7.0 90 < th dose independent rect. 3 16
662 34.99 temperature 10.0 10 > th dose dependent rect. 4 16
666 35.00 precipitation 0.1 14400 < th dose independent rect. 5 3
667 35.00 precipitation 0.1 14400 > th dose independent rect. 4 6
672 35.00 radiation 10.0 10 > th dose independent rect. 11 23
674 35.00 wind 1.0 14400 < th dose dependent rect. 6 2
675 35.00 precipitation 0.1 14400 < th dose dependent rect. 5 3
681 35.00 wind 9.0 10 < th dose dependent rect. 20 12
682 35.00 temperature 25.0 30 > th dose dependent rect. 21 14
683 35.00 wind 9.0 30 < th dose dependent rect. 4 16
697 35.01 temperature 30.0 1440 < th dose independent rect. 3 14
700 35.01 temperature 30.0 1440 < th dose independent rect. 24 16
705 35.01 temperature 30.0 1440 < th dose independent rect. 21 19
708 35.01 temperature 25.0 10 > th dose independent rect. 24 20
725 35.01 precipitation 0.1 14400 > th dose dependent rect. 4 6
729 35.02 temperature 20.0 720 > th dose independent rect. 14 1
734 35.02 wind 1.0 14400 > th dose independent rect. 4 4
735 35.02 temperature 30.0 1440 < th dose independent rect. 14 4
737 35.02 atmosphere 995.0 10 > th dose independent rect. 16 4
740 35.02 precipitation 0.1 14400 < th dose independent rect. 4 6
744 35.02 temperature 30.0 1440 < th dose independent rect. 7 9
747 35.02 precipitation 0.1 14400 > th dose independent rect. 4 10
750 35.02 temperature 30.0 1440 < th dose independent rect. 4 12
774 35.02 wind 9.0 14400 > th dose dependent rect. 13 1
780 35.02 temperature 30.0 1440 > th dose dependent rect. 14 2
789 35.02 precipitation 0.1 14400 < th dose dependent rect. 4 6
799 35.03 wind 5.0 4320 > th dose independent rect. 14 1
805 35.03 temperature 30.0 1440 > th dose independent rect. 14 3
827 35.03 precipitation 0.1 14400 < th dose independent rect. 4 10
841 35.03 atmosphere 1015.0 10 < th dose independent rect. 20 20
842 35.03 radiation 30.0 10 < th dose independent rect. 14 21
846 35.03 atmosphere 1000.0 10 < th dose independent rect. 20 23
855 35.03 humidity 60.0 10 > th dose dependent rect. 20 8
856 35.03 precipitation 0.1 14400 < th dose dependent rect. 4 10
871 35.04 radiation 10.0 270 > th dose independent rect. 6 3
894 35.04 temperature 30.0 1440 < th dose independent rect. 14 15
907 35.04 atmosphere 1000.0 10 < th dose independent rect. 21 21
918 35.04 atmosphere 1000.0 10 < th dose independent rect. 12 23
919 35.04 radiation 10.0 10 < th dose independent rect. 3 23
924 35.04 humidity 80.0 90 < th dose dependent rect. 2 1
925 35.04 humidity 90.0 10 < th dose dependent rect. 3 1
931 35.04 humidity 90.0 90 < th dose dependent rect. 2 5
939 35.05 humidity 90.0 10 < th dose independent rect. 3 1
948 35.05 temperature 30.0 1440 < th dose independent rect. 14 8
956 35.05 temperature 30.0 1440 < th dose independent rect. 14 11
980 35.05 atmosphere 1000.0 10 < th dose independent rect. 23 23
998 35.06 atmosphere 1000.0 10 > th dose independent no NA NA
1000 35.06 atmosphere 1000.0 10 < th dose independent no NA NA