BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0355700 Os03g0355700|Os03g0355700
         (501 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0355700  IQ calmodulin-binding region domain containing...   577   e-165

>Os03g0355700 IQ calmodulin-binding region domain containing protein
          Length = 501

 Score =  577 bits (1486), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 315/501 (62%), Positives = 315/501 (62%)

Query: 1   MERKRRGWLERIKRLFVSEXXXXXXXXXXXXXXRWMFAGKLKTQHSFALXXXXXXXXXXQ 60
           MERKRRGWLERIKRLFVSE              RWMFAGKLKTQHSFAL          Q
Sbjct: 1   MERKRRGWLERIKRLFVSEPKQKPKPDKKVKSKRWMFAGKLKTQHSFALPAPAPAVEEEQ 60

Query: 61  IRQAEDEQSKHXXXXXXXXXXXXXXXXXXXXXXXXXXRLTGKXXXXXXXXXXXXXXXXYG 120
           IRQAEDEQSKH                          RLTGK                YG
Sbjct: 61  IRQAEDEQSKHAMAVALATAAAAEAAVAAAHAAAEVVRLTGKTAALAPAPATTTTPTPYG 120

Query: 121 HEHAALMIQSXXXXXXXXXXXXXXXXXXXXQALIRGQAVRRQTAATLRGLESLMKIXXXX 180
           HEHAALMIQS                    QALIRGQAVRRQTAATLRGLESLMKI    
Sbjct: 121 HEHAALMIQSVYRGYLARRALRALKGLVRLQALIRGQAVRRQTAATLRGLESLMKIQARQ 180

Query: 181 XXXXXXXXXXGGDHNAANSPAPDGMDALLRRGRELYYAAAAAVHEQQLSKGWDSSTLSKX 240
                     GGDHNAANSPAPDGMDALLRRGRELYYAAAAAVHEQQLSKGWDSSTLSK 
Sbjct: 181 RARASSAAAAGGDHNAANSPAPDGMDALLRRGRELYYAAAAAVHEQQLSKGWDSSTLSKE 240

Query: 241 XXXXXXXXXXXXXLKRVRALQYASLHQSEKVGVRRQPMSREEMETLNQRWSWLEEWVGSQ 300
                        LKRVRALQYASLHQSEKVGVRRQPMSREEMETLNQRWSWLEEWVGSQ
Sbjct: 241 EMSAMSRSREEAALKRVRALQYASLHQSEKVGVRRQPMSREEMETLNQRWSWLEEWVGSQ 300

Query: 301 PPFDKDIPVAHQSPSRDAAGAAMNDDERXXXXXVLRSRSRADRLACVGGDDDDADRQLGY 360
           PPFDKDIPVAHQSPSRDAAGAAMNDDER     VLRSRSRADRLACVGGDDDDADRQLGY
Sbjct: 301 PPFDKDIPVAHQSPSRDAAGAAMNDDERPPPPPVLRSRSRADRLACVGGDDDDADRQLGY 360

Query: 361 SARRSFXXXXXXXXXXXXXXXXXXXXXXYMASTASAKAKFRSMSTPKERSGAGAADAYSE 420
           SARRSF                      YMASTASAKAKFRSMSTPKERSGAGAADAYSE
Sbjct: 361 SARRSFTRAGRRTPARDDDGGGAAAFPGYMASTASAKAKFRSMSTPKERSGAGAADAYSE 420

Query: 421 QCFPFADRLLXXXXXXXXXXXXXXXXVFXXXXXXXXXXXXXXVKGPMTPTXXXXXXXXXX 480
           QCFPFADRLL                VF              VKGPMTPT          
Sbjct: 421 QCFPFADRLLSPIPSMSPIPSIASDIVFARSSRPAAAQRSPRVKGPMTPTRSRSRRSPGR 480

Query: 481 XXXXXEAALHQLQMEQYTPIR 501
                EAALHQLQMEQYTPIR
Sbjct: 481 HSFGSEAALHQLQMEQYTPIR 501



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.129    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,536,915
Number of extensions: 321166
Number of successful extensions: 867
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 862
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 396
Effective length of database: 11,553,331
Effective search space: 4575119076
Effective search space used: 4575119076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)