Os03g0355700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : IQ calmodulin-binding region domain containing protein.
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Os03g0355700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : IQ calmodulin-binding region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.67 | 0.464 | 7.97 | 1.48 | 1.2 | -0.17 | -2.2 | 2.93 | 0.138 | 23.1 | 20.1 | 1400 | -- | -- |
| 113.84 | 0.497 | 8.04 | 1.11 | 1.21 | -0.495 | -2.04 | -- | 0.127 | 23 | 22.7 | 10689 | -- | -- |
| 115.26 | 0.5 | 7.96 | 1.59 | 1.2 | -0.233 | -- | 2.93 | 0.158 | 23.6 | 20.04 | 1599 | -- | -- |
| 121.47 | 0.513 | 8.08 | 1.57 | 1.25 | -1.08 | -- | -- | 0.0814 | 23.1 | 15.06 | 11553 | -- | -- |
| 200.7 | 0.663 | 7.99 | 1.27 | -- | -0.627 | -- | 1.25 | 0.104 | -- | 20.04 | 1599 | -- | -- |
| 120.74 | 0.515 | 8.08 | 0.764 | 1.19 | -- | -2.14 | -- | -0.0857 | 23 | -- | -- | -- | -- |
| 139.01 | 0.552 | 8.08 | 0.846 | 1.21 | -- | -- | -- | -0.082 | 23.5 | -- | -- | -- | -- |
| 208.85 | 0.676 | 8.02 | 1.06 | -- | -0.698 | -- | -- | 0.0562 | -- | 20.04 | 1599 | -- | -- |
| 157.29 | 0.587 | 8.1 | -- | 1.21 | -0.544 | -- | -- | -0.173 | 23.5 | 15.06 | 11553 | -- | -- |
| 230.35 | 0.709 | 8.05 | 0.878 | -- | -- | -- | -- | -0.0691 | -- | -- | -- | -- | -- |
| 157.87 | 0.588 | 8.1 | -- | 1.22 | -- | -- | -- | -0.176 | 23.5 | -- | -- | -- | -- |
| 236.63 | 0.716 | 8.14 | -- | -- | 0.676 | -- | -- | -0.189 | -- | 10.6 | 16537 | -- | -- |
| 250.71 | 0.739 | 8.07 | -- | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.39 | radiation | 20 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 4 | 93.66 | radiation | 20 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 6 | 94.24 | radiation | 30 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 16 | 96.02 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 14 |
| 24 | 96.48 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 35 | 96.72 | temperature | 20 | 720 | > th | dose independent | sin | 11 | NA |
| 46 | 97.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 14 |
| 48 | 97.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 14 |
| 49 | 97.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 50 | 97.14 | humidity | 80 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 55 | 97.16 | temperature | 20 | 1440 | > th | dose independent | sin | 16 | NA |
| 65 | 97.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 10 | 19 |
| 67 | 97.22 | temperature | 20 | 1440 | < th | dose independent | sin | 16 | NA |
| 79 | 97.27 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 90 | 97.29 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 96 | 97.32 | wind | 3 | 270 | > th | dose independent | rect. | 11 | 10 |
| 101 | 97.34 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 126 | 97.45 | humidity | 80 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 127 | 97.45 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 165 | 97.58 | radiation | 40 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 175 | 97.61 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 177 | 97.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 188 | 97.65 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 197 | 97.66 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 209 | 97.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 211 | 97.71 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 230 | 97.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 233 | 97.78 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 237 | 97.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 249 | 97.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 277 | 97.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 288 | 97.89 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 291 | 97.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 363 | 98.03 | temperature | 20 | 270 | > th | dose independent | sin | 7 | NA |
| 380 | 98.06 | wind | 1 | 43200 | > th | dose independent | sin | 3 | NA |
| 404 | 98.11 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 406 | 98.12 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 416 | 98.13 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 436 | 98.17 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 447 | 98.18 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 5 |
| 474 | 98.22 | wind | 3 | 43200 | < th | dose dependent | sin | 5 | NA |
| 479 | 98.23 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 484 | 98.23 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 486 | 98.24 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 518 | 98.28 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 528 | 98.29 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 554 | 98.33 | humidity | 80 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 602 | 98.41 | humidity | 80 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 608 | 98.42 | humidity | 80 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 612 | 98.43 | wind | 3 | 270 | > th | dose independent | sin | 20 | NA |
| 638 | 98.46 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 650 | 98.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 661 | 98.50 | humidity | 60 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 662 | 98.50 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 17 |
| 693 | 98.56 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 725 | 98.60 | wind | 3 | 43200 | < th | dose independent | sin | 10 | NA |
| 729 | 98.60 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 781 | 98.66 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 801 | 98.69 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 3 |
| 808 | 98.71 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 832 | 98.74 | wind | 3 | 43200 | > th | dose independent | sin | 10 | NA |
| 883 | 98.80 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 22 |
| 919 | 98.84 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 20 |
| 932 | 98.85 | wind | 1 | 270 | > th | dose dependent | rect. | 12 | 9 |
| 936 | 98.86 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 945 | 98.87 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 9 |