BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0340600 Os03g0340600|Os03g0340600
         (144 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0340600  Conserved hypothetical protein                      295   9e-81
Os04g0290200                                                      211   2e-55
Os06g0366400                                                      192   7e-50
Os08g0349600                                                      119   8e-28

>Os03g0340600 Conserved hypothetical protein
          Length = 144

 Score =  295 bits (755), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MAVFRLDPRVDQIQEMKSPASSHREQLWLSSVYGSPAAIGGSNRFEHKREIVENVLAHPV 60
           MAVFRLDPRVDQIQEMKSPASSHREQLWLSSVYGSPAAIGGSNRFEHKREIVENVLAHPV
Sbjct: 1   MAVFRLDPRVDQIQEMKSPASSHREQLWLSSVYGSPAAIGGSNRFEHKREIVENVLAHPV 60

Query: 61  LTKQRNGGSEVQGAAETVVDGQRRQNSGVDVAGSTQGANCNFESTGVLEMSHRGCMREES 120
           LTKQRNGGSEVQGAAETVVDGQRRQNSGVDVAGSTQGANCNFESTGVLEMSHRGCMREES
Sbjct: 61  LTKQRNGGSEVQGAAETVVDGQRRQNSGVDVAGSTQGANCNFESTGVLEMSHRGCMREES 120

Query: 121 GGNSPELGVASVCWLAAVDSAVSS 144
           GGNSPELGVASVCWLAAVDSAVSS
Sbjct: 121 GGNSPELGVASVCWLAAVDSAVSS 144



>Os04g0290200 
          Length = 153

 Score =  211 bits (536), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/134 (82%), Positives = 112/134 (83%), Gaps = 17/134 (12%)

Query: 16  MKSPASSHREQLWLSSVYGSPAAIGGSNRFEHKREIVENVLAHP---------------- 59
           MKSPASSHREQ WLSSVYGSPAAIGGSNRFE+KRE VENVLAHP                
Sbjct: 1   MKSPASSHREQQWLSSVYGSPAAIGGSNRFENKRENVENVLAHPGLDSAKGLVHVLSYGT 60

Query: 60  -VLTKQRNGGSEVQGAAETVVDGQRRQNSGVDVAGSTQGANCNFESTGVLEMSHRGCMRE 118
            VLTKQRNGGSEVQGA ETVV GQR+QNSGVDVAGSTQGANCNFESTGVL MSHRGCMRE
Sbjct: 61  RVLTKQRNGGSEVQGAVETVVVGQRQQNSGVDVAGSTQGANCNFESTGVLRMSHRGCMRE 120

Query: 119 ESGGNSPELGVASV 132
           ESGGNSPELGVASV
Sbjct: 121 ESGGNSPELGVASV 134



>Os06g0366400 
          Length = 363

 Score =  192 bits (488), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 101/142 (71%), Positives = 105/142 (73%), Gaps = 24/142 (16%)

Query: 16  MKSPASSHREQLWLSSVYGSPAAIGGSNRFEHKREIVENVLAHP---------------- 59
           MK PASSH+EQ WLSSVY SPAAI GSNRFEHKRE V+NVLAHP                
Sbjct: 1   MKFPASSHQEQPWLSSVYASPAAIDGSNRFEHKRENVKNVLAHPPVVVVRAMVVCSPWNM 60

Query: 60  --------VLTKQRNGGSEVQGAAETVVDGQRRQNSGVDVAGSTQGANCNFESTGVLEMS 111
                   VLTKQRN GSEVQG AETVV GQRRQNSG+DVAGSTQGANCNFES GVL MS
Sbjct: 61  SYSGGVSRVLTKQRNRGSEVQGVAETVVVGQRRQNSGIDVAGSTQGANCNFESMGVLGMS 120

Query: 112 HRGCMREESGGNSPELGVASVC 133
           HRGCMREES  NSP+LGVASV 
Sbjct: 121 HRGCMREESDRNSPDLGVASVV 142



>Os08g0349600 
          Length = 127

 Score =  119 bits (298), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 60/68 (88%), Positives = 61/68 (89%)

Query: 60  VLTKQRNGGSEVQGAAETVVDGQRRQNSGVDVAGSTQGANCNFESTGVLEMSHRGCMREE 119
           VLTKQRNGGSE+QGAAETVV G R QNS VDVAGSTQGANCNFESTGVL MSHRGCMREE
Sbjct: 55  VLTKQRNGGSEIQGAAETVVVGPRWQNSSVDVAGSTQGANCNFESTGVLGMSHRGCMREE 114

Query: 120 SGGNSPEL 127
            GGNSP L
Sbjct: 115 PGGNSPSL 122



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.127    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,535,023
Number of extensions: 231900
Number of successful extensions: 472
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 470
Number of HSP's successfully gapped: 4
Length of query: 144
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 53
Effective length of database: 12,284,327
Effective search space: 651069331
Effective search space used: 651069331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 151 (62.8 bits)