Os03g0340600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0340600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 246.86 | 0.738 | 4.79 | -0.83 | 0.343 | 2.42 | 0.442 | 0.191 | -1.02 | 11.4 | 15.01 | 77 | -- | -- |
| 246.88 | 0.732 | 4.8 | -0.858 | 0.34 | 2.41 | 0.47 | -- | -1.03 | 11.5 | 15.09 | 76 | -- | -- |
| 247.48 | 0.733 | 4.79 | -0.759 | 0.333 | 2.45 | -- | 0.627 | -1.01 | 10.9 | 15 | 76 | -- | -- |
| 247.8 | 0.733 | 4.8 | -0.855 | 0.335 | 2.45 | -- | -- | -1.03 | 11 | 15.2 | 76 | -- | -- |
| 252.49 | 0.74 | 4.8 | -0.79 | -- | 2.78 | -- | 0.708 | -1.04 | -- | 14.07 | 48 | -- | -- |
| 307.83 | 0.823 | 4.72 | -0.361 | 0.937 | -- | 0.966 | -- | -0.68 | 13.9 | -- | -- | -- | -- |
| 311.44 | 0.826 | 4.72 | -0.331 | 0.936 | -- | -- | -- | -0.674 | 13.8 | -- | -- | -- | -- |
| 252.62 | 0.74 | 4.81 | -0.887 | -- | 2.6 | -- | -- | -1.06 | -- | 15.97 | 45 | -- | -- |
| 260.71 | 0.752 | 4.76 | -- | 0.367 | 1.81 | -- | -- | -0.85 | 10.6 | 23.32 | 48 | -- | -- |
| 364.64 | 0.892 | 4.73 | -0.37 | -- | -- | -- | -- | -0.695 | -- | -- | -- | -- | -- |
| 314.34 | 0.829 | 4.71 | -- | 0.943 | -- | -- | -- | -0.637 | 13.8 | -- | -- | -- | -- |
| 268.32 | 0.763 | 4.77 | -- | -- | 1.97 | -- | -- | -0.88 | -- | 23.11 | 41 | -- | -- |
| 368.24 | 0.896 | 4.72 | -- | -- | -- | -- | -- | -0.654 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 239.85 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 11 | 244.67 | temperature | 20 | 30 | > th | dose dependent | rect. | 24 | 20 |
| 15 | 246.01 | temperature | 20 | 30 | > th | dose dependent | rect. | 24 | 23 |
| 19 | 246.36 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 25 | 247.21 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 27 | 247.27 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 36 | 247.93 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 48 | 248.82 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 50 | 248.86 | temperature | 25 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 73 | 249.91 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 80 | 250.26 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 21 |
| 172 | 251.44 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 282 | 252.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 6 |
| 304 | 252.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 317 | 252.99 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 334 | 253.08 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 404 | 253.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 453 | 253.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 463 | 253.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 466 | 253.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 3 |
| 602 | 254.78 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 621 | 254.87 | temperature | 25 | 720 | > th | dose dependent | sin | 8 | NA |
| 650 | 255.02 | temperature | 20 | 1440 | > th | dose dependent | sin | 2 | NA |
| 720 | 255.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 854 | 255.78 | temperature | 10 | 1440 | > th | dose dependent | sin | 1 | NA |
| 915 | 255.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 23 |